Evidence map›Paper›PMID 28709256›Full record

ArticlePhysical review. E2017

Modeling polymorphic transformation of rotating bacterial flagella in a viscous fluid.

William Ko, Sookkyung Lim, Wanho Lee, Yongsam Kim, Howard C Berg, Charles S Peskin

Abstract read
In one paragraph

Article in Physical review. E, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. The swimming of a deforming helix.The European physical journal. E, Soft matter · 2018
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

William KoDepartment of Mathematical Sciences, University of Cincinnati, 4199 French Hall West, Cincinnati, Ohio 45221, USA.
Sookkyung LimDepartment of Mathematical Sciences, University of Cincinnati, 4199 French Hall West, Cincinnati, Ohio 45221, USA.
Wanho LeeNational Institute for Mathematical Sciences, KT Daeduk 2 Research Center, 70, Yuseong-daero 1689-gil, Yuseong-gu, Daejeon 305-811, Republic of Korea.
Yongsam KimDepartment of Mathematics, Chung-Ang University, Dongjakgu, Heukseokdong, Seoul 156-756, Republic of Korea.
Howard C BergRowland Institute at Harvard, 100 Edwin H. Land Boulevard, Cambridge, Massachusetts 02142, USA.
Charles S PeskinCourant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, New York 10012, USA.

Funding

SENSORY TRANSDUCTION IN BACTERIAL CHEMOTAXISR01AI016478 · NIAID · HARVARD UNIVERSITY · PI BERG, HOWARD C · 1985 to 2019
$14.1M
NIAID NIH HHS R01 AI016478
6 · The paper itself

Abstract

The helical flagella that are attached to the cell body of bacteria such as Escherichia coli and Salmonella typhimurium allow the cell to swim in a fluid environment. These flagella are capable of polymorphic transformation in that they take on various helical shapes that differ in helical pitch, radius, and chirality. We present a mathematical model of a single flagellum described by Kirchhoff rod theory that is immersed in a fluid governed by Stokes equations. We perform numerical simulations to demonstrate two mechanisms by which polymorphic transformation can occur, as observed in experiments. First, we consider a flagellar filament attached to a rotary motor in which transformations are triggered by a reversal of the direction of motor rotation [L. Turner et al., J. Bacteriol. 182, 2793 (2000)10.1128/JB.182.10.2793-2801.2000]. We then consider a filament that is fixed on one end and immersed in an external fluid flow [H. Hotani, J. Mol. Biol. 156, 791 (1982)10.1016/0022-2836(82)90142-5]. The detailed dynamics of the helical flagellum interacting with a viscous fluid is discussed and comparisons with experimental and theoretical results are provided.

Indexed as

BacteriaFlagellaModels, BiologicalBacterial Physiological PhenomenaComputer SimulationMovementRotationTorsion, MechanicalViscoelastic SubstancesViscosityViscoelastic Substances

Identifiers

PMID28709256
PMCPMC5656015

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.