Evidence map›Paper›PMID 28708394›Full record

ArticleBiochemistry2017

Human Viperin Causes Radical SAM-Dependent Elongation of Escherichia coli, Hinting at Its Physiological Role.

Micah T Nelp, Anthony P Young, Branden M Stepanski, Vahe Bandarian

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Micah T NelpDepartment of Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States.
Anthony P YoungDepartment of Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States.
Branden M StepanskiDepartment of Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States.
Vahe BandarianDepartment of Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States.ORCID 0000-0003-2302-0277
University of Utah · US

Funding

Biosynthesis of Deazapurine-Containing MetabolitesR01GM072623 · NIGMS · UNIVERSITY OF UTAH · PI BANDARIAN, VAHE · 2005 to 2017
$3.9M
Mechanistic studies of thioether crosslink formation in peptidesR01GM120638 · NIGMS · UNIVERSITY OF UTAH · PI BANDARIAN, VAHE · 2016 to 2017
$695k
NIGMS NIH HHS R01 GM072623NIGMS NIH HHS R01 GM120638
6 · The paper itself

Abstract

Viperin (virus inhibitory protein, endoplasmic reticulum-associated, interferon-inducible) is a widely distributed protein that is expressed in response to infection and causes antiviral effects against a broad spectrum of viruses. Viperin is a member of the radical S-adenosyl-l-methionine (SAM) superfamily of enzymes, which typically employ a 4Fe-4S cluster to reductively cleave SAM to initiate chemistry. Though the specific reaction catalyzed by viperin remains unknown, it has been shown that expression of viperin causes an increase in the fluidity of lipid membranes, which impedes the budding of nascent viral particles from the membrane inhibiting propagation of the infection. Herein, we show that expression of the human viperin homologue induces a dramatically elongated morphology of the host Escherichia coli cells. Mutation of an essential cysteine that coordinates the radical SAM cluster abrogates this effect. Thus, the native radical SAM activity of viperin is likely occurring in the host bacteria, indicating the elusive substrate is shared between both bacteria and humans, significantly narrowing the range of potential candidate substrates and providing a convenient bacterial platform from which future studies can occur.

Indexed as

Amino Acid SubstitutionBacterial AdhesionCysteineEscherichia coliEscherichia coli ProteinsHost-Pathogen InteractionsHumansKineticsMicroscopy, ConfocalMutagenesis, Site-DirectedMutationOxidoreductases Acting on CH-CH Group DonorsPeptide FragmentsPeriplasmic Binding ProteinsProtein Interaction Domains and MotifsProteinsCysteineEscherichia coli ProteinsMalE protein, E coliOxidoreductases Acting on CH-CH Group DonorsPeptide FragmentsPeriplasmic Binding ProteinsProteinsRecombinant Fusion ProteinsRSAD2 protein, humanS-AdenosylmethionineViperin Protein

Identifiers

PMID28708394
PMCPMC6400073
OpenAlexW2736262082

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.