Evidence map›Paper›PMID 28706277›Full record

ArticleNature communications2017

DNA binding drives the association of BRG1/hBRM bromodomains with nucleosomes.

Emma A Morrison, Julio C Sanchez, Jehnna L Ronan, Daniel P Farrell, Katayoun Varzavand, Jenna K Johnson, Brian X Gu, Gerald R Crabtree, Catherine A Musselman

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
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  6. Review
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  10. WhiB-like proteins: Diversity of structure, function and mechanism.Biochimica et biophysica acta. Molecular cell research · 2024
    Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. (mis)-Targeting of SWI/SNF complex(es) in cancer.Cancer metastasis reviews · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Emma A MorrisonDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.
Julio C SanchezDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.
Jehnna L RonanProgram in Cancer Biology, and Departments of Pathology and Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, USA.
Daniel P FarrellDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.
Katayoun VarzavandDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.
Jenna K JohnsonDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.
Brian X GuDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.
Gerald R CrabtreeProgram in Cancer Biology, and Departments of Pathology and Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, USA.
Catherine A MusselmanDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.
University of Iowa · USStanford University · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
INTERDISCIPLINARY CARDIOVASCULAR RESEARCH FELLOWSHIPT32HL007121 · NHLBI · UNIVERSITY OF IOWA · PI LONDON, BARRY · 1985 to 2020
$15.1M
ATP-Dependent Chromatin Remodeling in Human MalignancyR01CA163915 · NCI · STANFORD UNIVERSITY · PI Gerald R. Crabtree · 2012 to 2026
$5.4M
Predoctoral Training in the Pharmacological SciencesT32GM067795 · NIGMS · UNIVERSITY OF IOWA · PI STRACK, STEFAN · 2004 to 2021
$3.4M
ATP-Dependent Chromatin Regulation in Neurodevelopment and Human DiseaseR37NS046789 · NINDS · STANFORD UNIVERSITY · PI CRABTREE, GERALD R. · 2013 to 2019
$2.7M
NCI NIH HHS R01 CA163915NHLBI NIH HHS T32 HL007121NIGMS NIH HHS T32 GM067795NINDS NIH HHS R37 NS046789
6 · The paper itself

Abstract

BRG1 and BRM, central components of the BAF (mSWI/SNF) chromatin remodelling complex, are critical in chromatin structure regulation. Here, we show that the human BRM (hBRM) bromodomain (BRD) has moderate specificity for H3K14ac. Surprisingly, we also find that both BRG1 and hBRM BRDs have DNA-binding activity. We demonstrate that the BRDs associate with DNA through a surface basic patch and that the BRD and an adjacent AT-hook make multivalent contacts with DNA, leading to robust affinity and moderate specificity for AT-rich elements. Although we show that the BRDs can bind to both DNA and H3K14ac simultaneously, the histone-binding activity does not contribute substantially to nucleosome targeting in vitro. In addition, we find that neither BRD histone nor DNA binding contribute to the global chromatin affinity of BRG1 in mouse embryonic stem cells. Together, our results suggest that association of the BRG1/hBRM BRD with nucleosomes plays a regulatory rather than targeting role in BAF activity.

Indexed as

AnimalsDNADNA HelicasesHistonesHumansMiceNuclear ProteinsNucleosomesTranscription FactorsDNADNA HelicasesHistonesNuclear ProteinsNucleosomesSMARCA2 protein, humanSMARCA4 protein, humanTranscription Factors

Identifiers

PMID28706277
PMCPMC5519978
OpenAlexW2734641630

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.