Evidence map›Paper›PMID 28705956›Full record

ArticleThe Plant cell2017

Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis.

Peter A Crisp, Diep R Ganguly, Aaron B Smith, Kevin D Murray, Gonzalo M Estavillo, Iain Searle, Ethan Ford, Ozren Bogdanović, Ryan Lister, Justin O Borevitz and 2 more

Abstract read
In one paragraph

Article in The Plant cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  8. Review
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  13. Live Single-Cell Transcriptional Dynamics in Plant Cells.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  14. Article
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  18. The mRNA decapping machinery targetsLife science alliance · 2023
    Article
  19. Review
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Peter A CrispAustralian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 0200, Australia.ORCID http://orcid.org/0000-0002-3655-0130
Diep R GangulyAustralian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 0200, Australia.ORCID http://orcid.org/0000-0001-6746-0181
Aaron B SmithAustralian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 0200, Australia.ORCID http://orcid.org/0000-0002-5828-0039
Kevin D MurrayAustralian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 0200, Australia.ORCID http://orcid.org/0000-0002-2466-1917
Gonzalo M EstavilloAustralian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 0200, Australia.
Iain SearleSchool of Biological Sciences, The University of Adelaide, SA 5005, Australia.ORCID http://orcid.org/0000-0003-4306-9756
Ethan FordAustralian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth WA 6009, Australia.ORCID http://orcid.org/0000-0002-8563-199X
Ozren BogdanovićAustralian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth WA 6009, Australia.ORCID http://orcid.org/0000-0001-5680-0056
Ryan ListerAustralian Research Council Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth WA 6009, Australia.ORCID http://orcid.org/0000-0001-6637-7239
Justin O BorevitzAustralian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 0200, Australia.ORCID http://orcid.org/0000-0001-8408-3699
Steven R EichtenAustralian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 0200, Australia.ORCID http://orcid.org/0000-0003-2268-395X
Barry J PogsonAustralian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 0200, Australia barry.pogson@anu.edu.au.ORCID http://orcid.org/0000-0003-1869-2423

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stress recovery may prove to be a promising approach to increase plant performance and, theoretically, mRNA instability may facilitate faster recovery. Transcriptome (RNA-seq, qPCR, sRNA-seq, and PARE) and methylome profiling during repeated excess-light stress and recovery was performed at intervals as short as 3 min. We demonstrate that 87% of the stress-upregulated mRNAs analyzed exhibit very rapid recovery. For instance,

Indexed as

Genes, PlantLightArabidopsisArabidopsis ProteinsDNA MethylationDown-RegulationGene Expression ProfilingGene Expression Regulation, PlantGene SilencingGenetic LociHalf-LifeNonlinear DynamicsProtein BiosynthesisReal-Time Polymerase Chain ReactionRNA, MessengerRNA, Small InterferingArabidopsis ProteinsRNA, MessengerRNA, Small Interfering

Identifiers

PMID28705956
PMCPMC5590493

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.