Evidence map›Paper›PMID 28705894›Full record

ArticleDevelopment (Cambridge, England)2017

Genome-wide analysis of facial skeletal regionalization in zebrafish.

Amjad Askary, Pengfei Xu, Lindsey Barske, Maxwell Bay, Paul Bump, Bartosz Balczerski, Michael A Bonaguidi, J Gage Crump

Open access · greenAbstract read
In one paragraph

Article in Development (Cambridge, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 55 citations in OpenAlex.

  1. Trial
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  7. The subfunctionalization ofFrontiers in cell and developmental biology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Craniofacial developmental biology in the single-cell era.Development (Cambridge, England) · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Distinct and redundant roles for zebrafishFrontiers in endocrinology · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Amjad AskaryEli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA 90033, USA.
Pengfei XuEli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA 90033, USA.
Lindsey BarskeEli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA 90033, USA.
Maxwell BayEli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA 90033, USA.
Paul BumpEli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA 90033, USA.
Bartosz BalczerskiEli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA 90033, USA.
Michael A BonaguidiEli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA 90033, USA.
J Gage CrumpEli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA 90033, USA gcrump@usc.edu.ORCID 0000-0002-3209-0026
University of Southern California · US

Funding

Training in Hearing & Communication NeuroscienceT32DC009975 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Christopher A Shera · 2009 to 2026
$5.0M
Epithelial-mesenchymal interactions in facial patterningR01DE018405 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CRUMP, GAGE D · 2007 to 2017
$4.1M
Training in Developmental Biology, Stem Cells and RegenerationT32HD060549 · NICHD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Gage D Crump · 2011 to 2026
$2.5M
Mechanisms Underlying Neural Stem Cell Heterogeneity in the Adult HippocampusR00NS080913 · NINDS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BONAGUIDI, MICHAEL · 2015 to 2017
$747k
Prolonged Progenitor Maintenance Sculpts the Upper FaceK99DE026239 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BARSKE, LINDSEY ANNE · 2016 to 2017
$252k
NICHD NIH HHS T32 HD060549NIDCD NIH HHS T32 DC009975NIDCR NIH HHS K99 DE026239NIDCR NIH HHS R01 DE018405NINDS NIH HHS R00 NS080913
6 · The paper itself

Abstract

Patterning of the facial skeleton involves the precise deployment of thousands of genes in distinct regions of the pharyngeal arches. Despite the significance for craniofacial development, how genetic programs drive this regionalization remains incompletely understood. Here we use combinatorial labeling of zebrafish cranial neural crest-derived cells (CNCCs) to define global gene expression along the dorsoventral axis of the developing arches. Intersection of region-specific transcriptomes with expression changes in response to signaling perturbations demonstrates complex roles for Endothelin 1 (Edn1) signaling in the intermediate joint-forming region, yet a surprisingly minor role in ventralmost regions. Analysis of co-variance across multiple sequencing experiments further reveals clusters of co-regulated genes, with

Indexed as

AnimalsBody PatterningBranchial RegionEndothelin-1Flow CytometryGene Expression Regulation, DevelopmentalIn Situ HybridizationZebrafishZebrafish ProteinsEndothelin-1Zebrafish ProteinsBoneCartilageCranial neural crestCraniofacialDlx5aDorsoventral patterningEdn1Emx2EndothelinFstaHand2Jagged-NotchJawMrrfSkeletonZebrafish

Identifiers

PMID28705894
PMCPMC5592815
OpenAlexW2734655754

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.