Evidence map›Paper›PMID 28704448›Full record

ArticlePloS one2017

RNAi-based reverse genetics in the chelicerate model Tetranychus urticae: A comparative analysis of five methods for gene silencing.

Takeshi Suzuki, Maria Andreia Nunes, María Urizarna España, Hooman Hosseinzadeh Namin, Pengyu Jin, Nicolas Bensoussan, Vladimir Zhurov, Tawhid Rahman, Rebecca De Clercq, Pierre Hilson and 2 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 93 citations in OpenAlex.

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  12. Functional Role ofInsects · 2022
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  15. Article
  16. Article
  17. An RNA Interference Tool to Silence Genes inInternational journal of molecular sciences · 2022
    Article
  18. Review
  19. Double-Strand RNA (dsRNA) Delivery Methods in Insects: Diaphorina citri.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 5 countries.

Takeshi SuzukiDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.
Maria Andreia NunesDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.
María Urizarna EspañaDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.
Hooman Hosseinzadeh NaminDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.
Pengyu JinDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.
Nicolas BensoussanDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.
Vladimir ZhurovDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.
Tawhid RahmanDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.
Rebecca De ClercqDepartment of Plant Systems Biology, VIB, Ghent, Belgium.
Pierre HilsonDepartment of Plant Systems Biology, VIB, Ghent, Belgium.
Vojislava GrbicDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.ORCID http://orcid.org/0000-0001-6570-8796
Miodrag GrbicDepartment of Biology, The University of Western Ontario, London, Ontario, Canada.
Western University · CAAgroParisTech · FRVlaams Instituut voor Biotechnologie · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA interference (RNAi) can be used for the protection against agricultural pests through the silencing of genes required for pest fitness. To assess the potential of RNAi approaches in the two-spotted spider mite, Tetranychus urticae, we compared 5 methods for the delivery of double-stranded RNA (dsRNA). These methods include mite feeding on either (i) leaves floating on a dsRNA solution, (ii) dsRNA-expressing plants, (iii) artificial diet supplemented with dsRNA, or (iv) dsRNA-coated leaves, and (v) mite soaking in a dsRNA solution. In all cases, the gene targeted for method validation was the Vacuolar-type H+-ATPase (TuVATPase), encoding a constitutively expressed ATP-driven proton pump located in the membrane. Down-regulation of TuVATPase increased mortality and/or reduced fecundity in all methods, but with variable efficiency. The most efficient methods for dsRNA delivery were direct soaking of mites in the dsRNA solution and mite feeding on dsRNA-coated leaves that mimics dsRNA application as a sprayable pesticide. Both resulted in a dark-body phenotype not observed in mites treated with a control dsRNA. Although with lower efficiency, dsRNA designed for TuVATPase silencing and expressed in transgenic Arabidopsis plants impacted the fitness of mites feeding on these plants. RNAi may thus be a valuable strategy to control spider mite populations, either as a sprayable pesticide or through transgenic crops. This comparative methodological study focusing on the induction of RNAi-based gene silencing in T. urticae paves the way for reverse genetics approaches in this model chelicerate system and prepares large-scale systematic RNAi screens as a first step towards the development of specific RNA-based pesticides. Such alternative molecules may help control spider mites that cause significant damages to crops and ornamental plant species, as well as other chelicerates detrimental to agriculture and health.

Indexed as

Gene SilencingAcariAnimalsGene TargetingInsect ProteinsVacuolar Proton-Translocating ATPasesInsect ProteinsVacuolar Proton-Translocating ATPases

Identifiers

PMID28704448
PMCPMC5507529
OpenAlexW2736155473

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.