Evidence map›Paper›PMID 28704427›Full record

ArticlePloS one2017

The influence of human exploration on the microbial community structure and ammonia oxidizing potential of the Su Bentu limestone cave in Sardinia, Italy.

Stefan Leuko, Kaisa Koskinen, Laura Sanna, Ilenia M D'Angeli, Jo De Waele, Paolo Marcia, Christine Moissl-Eichinger, Petra Rettberg

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. MappingApplied and environmental microbiology · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. The Gram-Negative Bacilli Isolated from Caves-International journal of environmental research and public health · 2022
    Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Stefan LeukoGerman Aerospace Center (DLR e.V.), Institute of Aerospace Medicine, Radiation Biology Department, Research Group 'Astrobiology', Linder Höhe, Cologne (Köln), Germany.ORCID http://orcid.org/0000-0002-0423-0896
Kaisa KoskinenMedical University of Graz, Section of Infectious Diseases and Tropical Medicine, Department of Internal Medicine, BioTechMed, Krenngasse, Graz, Austria.
Laura SannaInstitute for Biometeorology, National Research Council of Italy, Sassari, Italy.
Ilenia M D'AngeliItalian Institute of Speleology, University of Bologna, Bologna, Italy.
Jo De WaeleItalian Institute of Speleology, University of Bologna, Bologna, Italy.
Paolo MarciaDipartimento di Scienze della Natura e del Territorio, Università di Sassari, Sassari, Italy.
Christine Moissl-EichingerMedical University of Graz, Section of Infectious Diseases and Tropical Medicine, Department of Internal Medicine, BioTechMed, Krenngasse, Graz, Austria.
Petra RettbergGerman Aerospace Center (DLR e.V.), Institute of Aerospace Medicine, Radiation Biology Department, Research Group 'Astrobiology', Linder Höhe, Cologne (Köln), Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial diversity in the Su Bentu Cave in Sardinia was investigated by means of 16S rRNA gene-based analysis. This 15 km long cave, carved in Jurassic limestone, hosts a variety of calcite speleothems, and a long succession of subterranean lakes with mixed granite and carbonate sands. The lower level is occasionally flooded by a rising groundwater level, but with only scarce input of organic remains (leaves and charcoal fragments). On the quiet cave pools there are visible calcite rafts, whereas walls are locally coated with manganese deposits. In the drier upper levels, where organic input is much more subdued, moonmilk-a hydrated calcium-magnesium carbonate speleothem-can be found. Relative humidity approaches 100% and the measured mean annual cave air temperature is 14.8°C. Samples were obtained in 2014 from calcite rafts, moonmilk, manganese oxide deposits and soil (limestone and granite grains). Microclimatic conditions in the cave near the sampling sites, sample properties, physico-chemical parameters of water, and sediment composition were determined. The microbial community of this system is predominately composed of the phyla Proteobacteria, Actinobacteria, Acidobacteria, Nitrospirae, and Firmicutes. Sampling sites near the entrance of the cave and in close proximity of the underground campsite-located 500 meters deep into the cave-revealed the highest diversity as well as the highest number of human associated microorganisms. Two samples obtained in very close proximity of each other near the campsite, indicate that the human impact is localized and is not distributed freely within the system. Analysis of the abundance of bacterial and archaeal amoA genes revealed a far greater abundance of archaeal amoA genes compared to bacterial representatives. The results of this study highlight that human impact is confined to locations that are utilized as campsites and that exploration leaves little microbial trails. Furthermore, we uncovered a highly specialized microbiome, which is perfectly adapted to survive and thrive in an environment with low nutrient availability.

Indexed as

CampingMicrobiotaAmmoniaArchaeaBacteriaCalcium CarbonateCavesItalyOxidation-ReductionSoil MicrobiologyAmmoniaCalcium Carbonate

Identifiers

PMID28704427
PMCPMC5507542

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.