Evidence map›Paper›PMID 28701701›Full record

ArticleScientific reports2017

Systematic discovery of genetic modulation by Jumonji histone demethylases in Drosophila.

Nevine A Shalaby, Raheel Sayed, Qiao Zhang, Shane Scoggin, Susan Eliazer, Adrian Rothenfluh, Michael Buszczak

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Epigenetics · 2023
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  9. Ribosome biogenesis and function in development and disease.Development (Cambridge, England) · 2023
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  10. Article
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  12. TheJournal of neurogenetics · 2021
    Article
  13. Epigenetic Regulation of ALS and CMT: A Lesson fromInternational journal of molecular sciences · 2021
    Review
  14. Flying Together:International journal of molecular sciences · 2020
    Review
  15. Article
  16. The small members of the JMJD protein family: Enzymatic jewels or jinxes?Biochimica et biophysica acta. Reviews on cancer · 2019
    Review
  17. Article
  18. Dynamic redox balance directs the oocyte-to-embryo transition via developmentally controlled reactive cysteine changes.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Nevine A ShalabyDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Raheel SayedDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Qiao ZhangDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Shane ScogginDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Susan EliazerDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Adrian RothenfluhDepartment of Psychiatry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. adrian.rothenfluh@hsc.utah.edu.ORCID 0000-0002-3813-5723
Michael BuszczakDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. michael.buszczak@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USFreie Universität Berlin · DESouthwestern Medical Center · USUniversity of Utah · US

Funding

UT GASTROENTEROLOGY/HEPATOLOGY RESEARCH TRAINING PROGRAMT32DK007745 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI Rodney E Infante · 1997 to 2026
$6.8M
Control of Alcohol Responses by Actin-Regulating GenesR01AA019526 · NIAAA · UT SOUTHWESTERN MEDICAL CENTER · PI ROTHENFLUH, ADRIAN · 2010 to 2025
$5.4M
Decoding Stem Cell Chromatin Using DrosophilaR01GM086647 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI BUSZCZAK, MICHAEL · 2009 to 2013
$1.5M
Role of histone demethylases in experience dependent alcohol behaviorR21AA022404 · NIAAA · UT SOUTHWESTERN MEDICAL CENTER · PI BUSZCZAK, MICHAEL · 2014 to 2015
$411k
NIAAA NIH HHS R01 AA019526NIAAA NIH HHS R21 AA022404NIDDK NIH HHS T32 DK007745NIGMS NIH HHS R01 GM086647
6 · The paper itself

Abstract

Jumonji (JmjC) domain proteins influence gene expression and chromatin organization by way of histone demethylation, which provides a means to regulate the activity of genes across the genome. JmjC proteins have been associated with many human diseases including various cancers, developmental and neurological disorders, however, the shared biology and possible common contribution to organismal development and tissue homeostasis of all JmjC proteins remains unclear. Here, we systematically tested the function of all 13 Drosophila JmjC genes. Generation of molecularly defined null mutants revealed that loss of 8 out of 13 JmjC genes modify position effect variegation (PEV) phenotypes, consistent with their ascribed role in regulating chromatin organization. However, most JmjC genes do not critically regulate development, as 10 members are viable and fertile with no obvious developmental defects. Rather, we find that different JmjC mutants specifically alter the phenotypic outcomes in various sensitized genetic backgrounds. Our data demonstrate that, rather than controlling essential gene expression programs, Drosophila JmjC proteins generally act to "fine-tune" different biological processes.

Indexed as

DNA MethylationGene Expression RegulationAnimalsAnimals, Genetically ModifiedChromatinDrosophila melanogasterFemaleGene Regulatory NetworksHistonesJumonji Domain-Containing Histone DemethylasesMaleSignal TransductionChromatinHistonesJumonji Domain-Containing Histone Demethylases

Identifiers

PMID28701701
PMCPMC5507883
OpenAlexW2730590145

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.