Evidence map›Paper›PMID 28701419›Full record

ArticleJournal of clinical microbiology2017

Proviral Features of Human T Cell Leukemia Virus Type 1 in Carriers with Indeterminate Western Blot Analysis Results.

Madoka Kuramitsu, Tsuyoshi Sekizuka, Tadanori Yamochi, Sanaz Firouzi, Tomoo Sato, Kazumi Umeki, Daisuke Sasaki, Hiroo Hasegawa, Ryuji Kubota, Rieko Sobata and 23 more

Open access · bronzeAbstract readMulticenter Study
In one paragraph

Article in Journal of clinical microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 45 citations in OpenAlex.

  1. TAX gene expression is associated with western blot patterns and high viral loadin HTLV-1 infected individuals.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Molecular detection of human T cell lymphotropic virus type 1 in pregnant women from Maranhão state, Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 15 institutions in 1 country.

Madoka KuramitsuDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo, Japan.ORCID 0000-0002-3064-5219
Tsuyoshi SekizukaPathogen Genomic Center, National Institute of Infectious Diseases, Tokyo, Japan.
Tadanori YamochiDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Tokyo, Japan.
Sanaz FirouziDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Tokyo, Japan.
Tomoo SatoDepartment of Rare Diseases Research, Institute of Medical Science, St. Marianna University School of Medicine, Kawasaki, Japan.
Kazumi UmekiDepartment of Rheumatology, Infectious Diseases and Laboratory Medicine, University of Miyazaki, Miyazaki, Japan.
Daisuke SasakiDepartment of Laboratory Medicine, Nagasaki University Hospital, Nagasaki, Japan.
Hiroo HasegawaDepartment of Laboratory Medicine, Nagasaki University Hospital, Nagasaki, Japan.
Ryuji KubotaDivision of Molecular Pathology, Center for Chronic Viral Diseases, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan.
Rieko SobataCentral Blood Institute, Blood Service Headquarters, Japanese Red Cross Society, Tokyo, Japan.
Chieko MatsumotoCentral Blood Institute, Blood Service Headquarters, Japanese Red Cross Society, Tokyo, Japan.
Noriaki KanekoDepartment of Special Testing, SRL Inc., Tokyo, Japan.
Haruka MomoseDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo, Japan.
Kumiko ArakiDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo, Japan.
Masumichi SaitoDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo, Japan.
Kisato NosakaDepartment of Hematology, Kumamoto University of Medicine, Kumamoto, Japan.
Atae UtsunomiyaDepartment of Hematology, Imamura Bun-in Hospital, Kagoshima, Japan.
Ki-Ryang KohDepartment of Hematology, Osaka General Hospital of West Japan Railway Company, Osaka, Japan.
Masao OgataDepartment of Medical Oncology and Hematology, Oita University Faculty of Medicine, Oita, Japan.
Kaoru UchimaruDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Tokyo, Japan.
Masako IwanagaDepartment of Frontier Life Science, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Japan.
Yasuko SagaraJapanese Red Cross Kyushu Block Blood Center, Fukuoka, Japan.
Yoshihisa YamanoDepartment of Rare Diseases Research, Institute of Medical Science, St. Marianna University School of Medicine, Kawasaki, Japan.
Akihiko OkayamaDepartment of Rheumatology, Infectious Diseases and Laboratory Medicine, University of Miyazaki, Miyazaki, Japan.
Kiyonori MiuraDepartment of Obstetrics and Gynecology, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Japan.
Masahiro SatakeCentral Blood Institute, Blood Service Headquarters, Japanese Red Cross Society, Tokyo, Japan.
Shigeru SaitoDepartment of Obstetrics and Gynecology, University of Toyama, Toyama, Japan.
Kazuo ItabashiDepartment of Pediatrics, Showa University School of Medicine, Tokyo, Japan.
Kazunari YamaguchiDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo, Japan.
Makoto KurodaPathogen Genomic Center, National Institute of Infectious Diseases, Tokyo, Japan.
Toshiki WatanabeDepartment of Advanced Medical Innovation, Graduate School of Medicine, St. Marianna University, Kawasaki, Japan.
Kazu OkumaDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo, Japan.
Isao HamaguchiDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo, Japan 130hama@niid.go.jp.
National Institute of Infectious Diseases · JPJapanese Red Cross Society, Japan · JPSt. Marianna University School of Medicine · JPThe University of Tokyo · JPNagasaki University · JPNagasaki University Hospital · JPUniversity of Miyazaki · JPImamura Hospital · JPJapanese Red Cross Fukuoka Hospital · JPKagoshima University · JPKumamoto University · JPOita University · JPShowa University · JPSRL (Japan) · JPUniversity of Toyama · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Western blotting (WB) for human T cell leukemia virus type 1 (HTLV-1) is performed to confirm anti-HTLV-1 antibodies detected at the initial screening of blood donors and in pregnant women. However, the frequent occurrence of indeterminate results is a problem with this test. We therefore assessed the cause of indeterminate WB results by analyzing HTLV-1 provirus genomic sequences. A quantitative PCR assay measuring HTLV-1 provirus in WB-indeterminate samples revealed that the median proviral load was approximately 100-fold lower than that of WB-positive samples (0.01 versus 0.71 copy/100 cells). Phylogenic analysis of the complete HTLV-1 genomes of WB-indeterminate samples did not identify any specific phylogenetic groups. When we analyzed the nucleotide changes in 19 HTLV-1 isolates from WB-indeterminate samples, we identified 135 single nucleotide substitutions, composed of four types, G to A (29%), C to T (19%), T to C (19%), and A to G (16%). In the most frequent G-to-A substitution, 64% occurred at GG dinucleotides, indicating that APOBEC3G is responsible for mutagenesis in WB-indeterminate samples. Moreover, interestingly, five WB-indeterminate isolates had nonsense mutations in Pol and/or Tax, Env, p12, and p30. These findings suggest that WB-indeterminate carriers have low production of viral antigens because of a combination of a low proviral load and mutations in the provirus, which may interfere with host recognition of HTLV-1 antigens.

Indexed as

Antibodies, ViralAPOBEC-3G DeaminaseBlood DonorsBlotting, WesternCell LineCodon, NonsenseFemaleGenome, ViralHTLV-I InfectionsHumansHuman T-lymphotropic virus 1PregnancyProvirusesReal-Time Polymerase Chain ReactionSerologic TestsViral LoadAntibodies, ViralAPOBEC-3G DeaminaseAPOBEC3G protein, humanCodon, Nonsensehuman T cell leukemia virusnonsense mutationnucleic acid technologynucleotide substitutionproviral loadprovirusWestern blot indeterminate

Identifiers

PMID28701419
PMCPMC5648719
OpenAlexW2735574637

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.