Evidence map›Paper›PMID 28701171›Full record

ArticleLipids in health and disease2017

Identification and characterization of single nucleotide polymorphism markers in FADS2 gene associated with olive oil fatty acids composition.

Rayda Ben Ayed, Karim Ennouri, Hajer Ben Hlima, Slim Smaoui, Mohsen Hanana, Rim Mzid, Sezai Ercişli, Ahmed Rebai

Open access · goldAbstract read
In one paragraph

Article in Lipids in health and disease, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Association Study of the 5'UTR Intron of theFrontiers in plant science · 2020
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Rayda Ben AyedMolecular and Cellular Screening Processes: Research group, Microorganisms and Biomolecules Laboratory, Centre of Biotechnology of Sfax, BP '1177' Sidi Mansour road, 3018, Sfax, Tunisia. raydabenayed@yahoo.fr.
Karim EnnouriMolecular and Cellular Screening Processes: Research group, Microorganisms and Biomolecules Laboratory, Centre of Biotechnology of Sfax, BP '1177' Sidi Mansour road, 3018, Sfax, Tunisia.
Hajer Ben HlimaUnité de Biotechnologie des Algues, Biological Engineering Department, National School of Engineers of Sfax, University of Sfax, Sfax, Tunisia.
Slim SmaouiLaboratory of Microorganisms and Biomolecules, Center of Biotechnology of Sfax, PB 1177, 3018, Sfax, Tunisia.
Mohsen HananaLaboratory of Extrêmophile Plants, Biotechnology Center of Borj-Cédria, B.P. 901, 2050, Hammam Lif, Tunisie.
Rim MzidLaboratory of Extrêmophile Plants, Biotechnology Center of Borj-Cédria, B.P. 901, 2050, Hammam Lif, Tunisie.
Sezai ErcişliAtaturk University, Faculty of Agriculture, Department of Horticulture, 25240, Erzurum, Turkey.
Ahmed RebaiMolecular and Cellular Screening Processes: Research group, Microorganisms and Biomolecules Laboratory, Centre of Biotechnology of Sfax, BP '1177' Sidi Mansour road, 3018, Sfax, Tunisia.
Centre of Biotechnology of Sfax · TNCenter of Biotechnogy of Borj Cédria · TNAtatürk University · TRUniversity of Sfax · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGenotyping of the FAD2.1 and FAD2.3 polymorphisms in the fatty acid desaturase 2 gene (FADS2) shows that they are associated with the fatty acids composition of olive oil samples. However, these associations require further confirmation in the Tunisian olive oil cultivars, and little is known about the effect of polymorphisms in fatty acid-related genes on olive oil mono- and poly- unsaturated fatty acids distribution.

methodsA set of olive oils from 12 Tunisian cultivars was chosen. The fatty acid composition of each olive oil sample was determined by gas chromatography. Statistical and modeling Bayesian analyses were used to assess whether the FAD2.1 and FAD2.3 genotypes were associated with fatty acids composition.

resultsThe TT-FAD2.1 and the GG-FAD2.3 genotypes were found to be associated with a lower proportion of oleic acid (C18:1) (r = -0.778, p = 0.003; r = -0.781, p= 0.003) as well as higher proportion of linoleic (C18:2) (r = 0.693, p = 0.012; r = -0.759, p= 0.004) and palmitic acids (C16:0) (r = 0.643, p = 0.024; r = -0.503, p= 0.095), making varieties with this haplotype (i.e. Chemlali Sfax and Meski) producing more saturated (C16: 0) and polyunsaturated acids than oleic acid. The latter plays a major role in preventing several diseases.

conclusionThe two associations FADS2 FAD2.1 and FADS2 FAD2.3 with the fatty acid compositions of olive oil samples were identified among the studied olive cultivars. These associations differed between studied cultivars, which might explain variability in lipidic composition among them and consequently reflecting genetic diversity through differences in gene expression and biochemical pathways. FADS2 locus would constitute thus a good marker for detecting interesting lipidic chemotypes among commercial olive oils.

Indexed as

Bayes TheoremFatty Acid DesaturasesFatty AcidsGenotypeHumansLinoleic AcidOlive OilPalmitic AcidsPolymorphism, Restriction Fragment LengthPolymorphism, Single NucleotideFatty Acid DesaturasesFatty AcidsLinoleic AcidOlive OilPalmitic AcidsFADS2Fatty acid compositionOleic acidOlive oilQualitySNP genotype

Identifiers

PMID28701171
PMCPMC5508634
OpenAlexW2735759959

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.