Evidence map›Paper›PMID 28701150›Full record

ArticleBMC microbiology2017

Physiological roles of sigma factor SigD in Corynebacterium glutamicum.

Hironori Taniguchi, Tobias Busche, Thomas Patschkowski, Karsten Niehaus, Miroslav Pátek, Jörn Kalinowski, Volker F Wendisch

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  11. Proteomes · 2021
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Hironori TaniguchiGenetics of Prokaryotes, Faculty of Biology, Bielefeld University, Bielefeld, Germany.
Tobias BuscheCenter for Biotechnology, Bielefeld University, Bielefeld, Germany.
Thomas PatschkowskiCenter for Biotechnology, Bielefeld University, Bielefeld, Germany.
Karsten NiehausCenter for Biotechnology, Bielefeld University, Bielefeld, Germany.
Miroslav PátekInstitute of Microbiology, Academy of Sciences of the Czech Republic, Prague, Czech Republic.
Jörn KalinowskiCenter for Biotechnology, Bielefeld University, Bielefeld, Germany.
Volker F WendischGenetics of Prokaryotes, Faculty of Biology, Bielefeld University, Bielefeld, Germany. volker.wendisch@uni-bielefeld.de.ORCID http://orcid.org/0000-0003-3473-0012
Bielefeld University · DECzech Academy of Sciences · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSigma factors are one of the components of RNA polymerase holoenzymes, and an essential factor of transcription initiation in bacteria. Corynebacterium glutamicum possesses seven genes coding for sigma factors, most of which have been studied to some detail; however, the role of SigD in transcriptional regulation in C. glutamicum has been mostly unknown.

resultsIn this work, pleiotropic effects of sigD overexpression at the level of phenotype, transcripts, proteins and metabolites were investigated. Overexpression of sigD decreased the growth rate of C. glutamicum cultures, and induced several physiological effects such as reduced culture foaming, turbid supernatant and cell aggregation. Upon overexpression of sigD, the level of Cmt1 (corynomycolyl transferase) in the supernatant was notably enhanced, and carbohydrate-containing compounds were excreted to the supernatant. The real-time PCR analysis revealed that sigD overexpression increased the expression of genes related to corynomycolic acid synthesis (fadD2, pks), genes encoding corynomycolyl transferases (cop1, cmt1, cmt2, cmt3), L, D-transpeptidase (lppS), a subunit of the major cell wall channel (porH), and the envelope lipid regulation factor (elrF). Furthermore, overexpression of sigD resulted in trehalose dicorynomycolate accumulation in the cell envelope.

conclusionsThis study demonstrated that SigD regulates the synthesis of corynomycolate and related compounds, and expanded the knowledge of regulatory functions of sigma factors in C. glutamicum.

Indexed as

Bacterial ProteinsCorynebacterium glutamicumGene Expression Regulation, BacterialMycolic AcidsSigma FactorBacterial Proteinscorynomycolic acidMycolic AcidsSigma FactorCorynebacterium glutamicumMycomembraneSigDSigma factorTrehalose dicorynomycolate

Identifiers

PMID28701150
PMCPMC5508688
OpenAlexW2735764646

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.