Evidence map›Paper›PMID 28700629›Full record

ArticlePloS one2017

Escherichia coli DNA ligase B may mitigate damage from oxidative stress.

Truston J Bodine, Michael A Evangelista, Huan Ting Chang, Christopher A Ayoub, Buck S Samuel, Richard Sucgang, Lynn Zechiedrich

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Truston J BodineInterdepartmental Program in Translational Biology and Molecular Medicine, Baylor College of Medicine, Houston, TX, United States of America.
Michael A EvangelistaDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America.
Huan Ting ChangDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America.
Christopher A AyoubDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America.
Buck S SamuelDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, United States of America.
Richard SucgangVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, United States of America.
Lynn ZechiedrichInterdepartmental Program in Translational Biology and Molecular Medicine, Baylor College of Medicine, Houston, TX, United States of America.ORCID http://orcid.org/0000-0003-0533-1637
Baylor College of Medicine · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007330 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PLON, SHARON E. · 1985 to 2019
$15.6M
COMBATTING QUINOLONE ANTIMICROBIAL RESISTANCER01AI054830 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI ZECHIEDRICH, LYNN · 2004 to 2012
$3.2M
Training Program in Translational Biology and Molecular MedicineT32GM088129 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ROONEY, CLIONA M., VAN DEN VEYVER, IGNATIA B · 2010 to 2019
$3.0M
S2: Molecular Mechanisms Underlying Fluoroquinolone Susceptibility and ResistanceR01GM115501 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ZECHIEDRICH, LYNN · 2015 to 2018
$1.7M
Combatting Antimicrobial ResistanceR56AI054830 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI ZECHIEDRICH, LYNN · 2014 to 2014
$394k
NIAID NIH HHS R01 AI054830NIAID NIH HHS R56 AI054830NIGMS NIH HHS R01 GM115501NIGMS NIH HHS T32 GM007330NIGMS NIH HHS T32 GM088129
6 · The paper itself

Abstract

Escherichia coli encodes two DNA ligases, ligase A, which is essential under normal laboratory growth conditions, and ligase B, which is not. Here we report potential functions of ligase B. We found that across the entire Enterobacteriaceae family, ligase B is highly conserved in both amino acid identity and synteny with genes associated with oxidative stress. Deletion of ligB sensitized E. coli to specific DNA damaging agents and antibiotics resulted in a weak mutator phenotype, and decreased biofilm formation. Overexpression of ligB caused a dramatic extension of lag phase that eventually resumed normal growth. The ligase function of ligase B was not required to mediate the extended lag phase, as overexpression of a ligase-deficient ligB mutant also blocked growth. Overexpression of ligB during logarithmic growth caused an immediate block of cell growth and DNA replication, and death of about half of cells. These data support a potential role for ligase B in the base excision repair pathway or the mismatch repair pathway.

Indexed as

DNA DamageDNA LigasesDNA ReplicationEnterobacteriaceaeEscherichia coliOxidative StressDNA Ligases

Identifiers

PMID28700629
PMCPMC5507437
OpenAlexW2735410662

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.