Evidence map›Paper›PMID 28698641›Full record

ArticleScientific reports2017

A Transcription Activator-Like Effector Tal7 of Xanthomonas oryzae pv. oryzicola Activates Rice Gene Os09g29100 to Suppress Rice Immunity.

Lulu Cai, Yanyan Cao, Zhengyin Xu, Wenxiu Ma, Muhammad Zakria, Lifang Zou, Zaiquan Cheng, Gongyou Chen

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Review
  2. Review
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  6. Review
  7. Article
  8. Review
  9. Article
  10. Ectopic Expression of Executor GeneInternational journal of molecular sciences · 2022
    Article
  11. Article
  12. Article
  13. APlant communications · 2022
    Article
  14. Tal2c Activates the Expression ofInternational journal of molecular sciences · 2021
    Article
  15. Bactericidal Effect ofFrontiers in microbiology · 2021
    Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. A Pathovar ofFrontiers in plant science · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lulu CaiSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban (South) by Ministry of Agriculture, Shanghai, 200240, China.
Yanyan CaoSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban (South) by Ministry of Agriculture, Shanghai, 200240, China.
Zhengyin XuSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban (South) by Ministry of Agriculture, Shanghai, 200240, China.
Wenxiu MaSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban (South) by Ministry of Agriculture, Shanghai, 200240, China.
Muhammad ZakriaSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban (South) by Ministry of Agriculture, Shanghai, 200240, China.
Lifang ZouSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban (South) by Ministry of Agriculture, Shanghai, 200240, China.
Zaiquan ChengBiotechnology and Genetic Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650223, China. czquan-99@163.com.
Gongyou ChenSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban (South) by Ministry of Agriculture, Shanghai, 200240, China. gyouchen@sjtu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xanthomonas oryzae pv. oryzicola (Xoc) and X. oryzae pv. oryzae (Xoo) cause bacterial leaf streak (BLS) and bacterial leaf blight (BLB) in rice, respectively. Unlike Xoo, endogenous avirulence-resistance (avr-R) gene interactions have not been identified in the Xoc-rice pathosystem; however, both pathogens possess transcription activator-like effectors (TALEs) that are known to modulate R or S genes in rice. The transfer of individual tal genes from Xoc RS105 (hypervirulent) into Xoc YNB0-17 (hypovirulent) led to the identification of tal7, which suppressed avrXa7-Xa7 mediated defense in rice containing an Xa7 R gene. Mobility shift and microscale thermophoresis assays showed that Tal7 bound two EBE sites in the promoters of two rice genes, Os09g29100 and Os12g42970, which encode predicted Cyclin-D4-1 and GATA zinc finger family protein, respectively. Assays using designer TALEs and a TALE-free strain of Xoo revealed that Os09g29100 was the biologically relevant target of Tal7. Tal7 activates the expression of rice gene Os09g29100 that suppresses avrXa7-Xa7 mediated defense in Rice. TALEN editing of the Tal7-binding site in the Os09g29100 gene promoter further enhanced resistance to the pathogen Xoc RS105. The suppression of effector-trigger immunity (ETI) is a phenomenon that may contribute to the scarcity of BLS resistant cultivars.

Indexed as

Gene Expression Regulation, PlantGenes, PlantBacterial ProteinsBase SequenceBinding SitesOryzaPlant DiseasesPlant ImmunityPlant ProteinsPromoter Regions, GeneticProtein BindingTranscription Activator-Like EffectorsXanthomonasBacterial ProteinsPlant ProteinsTranscription Activator-Like Effectors

Identifiers

PMID28698641
PMCPMC5505973

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.