Evidence map›Paper›PMID 28698607›Full record

ArticleScientific reports2017

Divergent evolution of Di-lysine ER retention vs. farnesylation motif-mediated anchoring of the AnkB virulence effector to the Legionella-containing vacuolar membrane.

John D Perpich, Awdhesh Kalia, Christopher T D Price, Snake C Jones, Kathy Wong, Kalle Gehring, Yousef Abu Kwaik

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. PathogenicFrontiers in microbiology · 2022
    Article
  2. A Search for NovelFrontiers in cellular and infection microbiology · 2022
    Article
  3. Evolution and Adaptation ofBiomolecules · 2021
    Review
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

John D PerpichDepartment of Microbiology and Immunology, College of Medicine, University of Louisville, Louisville, KY, USA.
Awdhesh KaliaGraduate Program in Diagnostic Genetics, School of Health Professions, The University of Texas MD Anderson Cancer Center, Houston, TX, USA. akalia@mdanderson.org.
Christopher T D PriceDepartment of Microbiology and Immunology, College of Medicine, University of Louisville, Louisville, KY, USA.
Snake C JonesDepartment of Microbiology and Immunology, College of Medicine, University of Louisville, Louisville, KY, USA.
Kathy WongDepartment of Biochemistry and Groupe de recherche axé sur la structure des protéines, McGill University, Montreal, Quebec, H3G 0B1, Canada.
Kalle GehringDepartment of Biochemistry and Groupe de recherche axé sur la structure des protéines, McGill University, Montreal, Quebec, H3G 0B1, Canada.ORCID 0000-0001-6500-1184
Yousef Abu KwaikDepartment of Microbiology and Immunology, College of Medicine, University of Louisville, Louisville, KY, USA. abukwaik@louisville.edu.
University of Louisville · USMcGill University · CAThe University of Texas MD Anderson Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Within macrophages and amoeba, the Legionella-containing vacuole (LCV) membrane is derived from the ER. The bona fide F-box AnkB effector protein of L. pneumophila strain AA100/130b is anchored to the cytosolic side of the LCV membrane through host-mediated farnesylation of its C-terminal eukaryotic "CaaX" motif. Here we show that the AnkB homologue of the Paris strain has a frame shift mutation that led to a loss of the CaaX motif and a concurrent generation of a unique C-terminal KNKYAP motif, which resembles the eukaryotic di-lysine ER-retention motif (KxKxx). Our phylogenetic analyses indicate that environmental isolates of L. pneumophila have a potential positive selection for the ER-retention KNKYAP motif. The AnkB-Paris effector is localized to the LCV membrane most likely through the ER-retention motif. Its ectopic expression in HEK293T cells localizes it to the perinuclear ER region and it trans-rescues the ankB mutant of strain AA100/130b in intra-vacuolar replication. The di-lysine ER retention motif of AnkB-Paris is indispensable for function; most likely as an ER retention motif that enables anchoring to the ER-derived LCV membrane. Our findings show divergent evolution of the ankB allele in exploiting either host farnesylation or the ER retention motif to be anchored into the LCV membrane.

Indexed as

Amino Acid MotifsAnkyrinsBacterial ProteinsEndoplasmic ReticulumFrameshift MutationHEK293 CellsHumansLegionellaLysinePhylogenyPrenylationVacuolesVirulence FactorsAnkyrinsBacterial ProteinsLysineVirulence Factors

Identifiers

PMID28698607
PMCPMC5506055
OpenAlexW2730293592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.