Evidence map›Paper›PMID 28696426›Full record

ArticleScientific data2017

An imaging dataset of cervical cells using scanning near-field optical microscopy coupled to an infrared free electron laser.

Diane E Halliwell, Camilo L M Morais, Kássio M G Lima, Júlio Trevisan, Michele R F Siggel-King, Tim Craig, James Ingham, David S Martin, Kelly Heys, Maria Kyrgiou and 8 more

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 97% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Disassembly of Amyloid Fibril with Infrared Free Electron Laser.International journal of molecular sciences · 2023
    Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 4 countries.

Diane E HalliwellCentre for Biophotonics, LEC, Lancaster University, Bailrigg, Lancaster LA1 4YW, UK.
Camilo L M MoraisBiological Chemistry and Chemometrics, Institute of Chemistry, Federal University of Rio Grande do Norte, Natal 59072-970 RN, Brazil.
Kássio M G LimaBiological Chemistry and Chemometrics, Institute of Chemistry, Federal University of Rio Grande do Norte, Natal 59072-970 RN, Brazil.
Júlio TrevisanInstitute of Astronomy, Geophysics and Atmospheric Sciences, University of São Paulo, Cidade Universitária, R. do Matão, 1226 - Butantã, São Paulo - SP, 05508-090, Brazil.
Michele R F Siggel-KingUniversity Department of Physics, The Oliver Lodge Laboratory, Cambridge St, Liverpool L69 7ZE, UK.
Tim CraigUniversity Department of Physics, The Oliver Lodge Laboratory, Cambridge St, Liverpool L69 7ZE, UK.
James InghamUniversity Department of Physics, The Oliver Lodge Laboratory, Cambridge St, Liverpool L69 7ZE, UK.
David S MartinUniversity Department of Physics, The Oliver Lodge Laboratory, Cambridge St, Liverpool L69 7ZE, UK.
Kelly HeysCentre for Biophotonics, LEC, Lancaster University, Bailrigg, Lancaster LA1 4YW, UK.
Maria KyrgiouInstitute of Reproductive and Developmental Biology, Department of Surgery &Cancer, Faculty of Medicine, Imperial College, South Kensington Campus, London SW7 2AZ, UK.
Anita MitraInstitute of Reproductive and Developmental Biology, Department of Surgery &Cancer, Faculty of Medicine, Imperial College, South Kensington Campus, London SW7 2AZ, UK.ORCID 0000-0003-0236-795X
Evangelos ParaskevaidisDepartment of Obstetrics and Gynaecology, University of Ioannina, Panepistemioypole, Panepistemio, Ioannina, 45110 Greece.
Georgios TheophilouSt James University Hospital, Beckett St, Leeds LS9 7TF, UK.
Pierre L Martin-HirschCentre for Biophotonics, LEC, Lancaster University, Bailrigg, Lancaster LA1 4YW, UK.
Antonio CricentiIstituto di Struttura della Materia, Via del Fosso del Cavaliere, 100 - 00133 Rome (RM), Italy.ORCID 0000-0002-8581-3478
Marco LuceIstituto di Struttura della Materia, Via del Fosso del Cavaliere, 100 - 00133 Rome (RM), Italy.
Peter WeightmanUniversity Department of Physics, The Oliver Lodge Laboratory, Cambridge St, Liverpool L69 7ZE, UK.
Francis L MartinCentre for Biophotonics, LEC, Lancaster University, Bailrigg, Lancaster LA1 4YW, UK.ORCID 0000-0001-8562-4944
University of Liverpool · GBInstitute of Structure of Matter · ITSt Mary's Hospital · GBUniversidade Federal do Rio Grande do Norte · BRUniversity of Lancashire · GBLancashire Teaching Hospitals NHS Foundation Trust · GBLancaster University · GBSt James's University Hospital · GBUniversidade de São Paulo · BRUniversity of Ioannina · GR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using a scanning near-field optical microscope coupled to an infrared free electron laser (SNOM-IR-FEL) in low-resolution transmission mode, we collected chemical data from whole cervical cells obtained from 5 pre-menopausal, non-pregnant women of reproductive age, and cytologically classified as normal or with different grades of cervical cell dyskaryosis. Imaging data are complemented by demography. All samples were collected before any treatment. Spectra were also collected using attenuated total reflection, Fourier-transform (ATR-FTIR) spectroscopy, to investigate the differences between the two techniques. Results of this pilot study suggests SNOM-IR-FEL may be able to distinguish cervical abnormalities based upon changes in the chemical profiles for each grade of dyskaryosis at designated wavelengths associated with DNA, Amide I/II, and lipids. The novel data sets are the first collected using SNOM-IR-FEL in transmission mode at the ALICE facility (UK), and obtained using whole cells as opposed to tissue sections, thus providing an 'intact' chemical profile. These data sets are suited to complementing future work on image analysis, and/or applying the newly developed algorithm to other datasets collected using the SNOM-IR-FEL approach.

Indexed as

Cell NucleusCervix UteriFemaleHumansLasersMicroscopySpectroscopy, Fourier Transform Infrared

Identifiers

PMID28696426
PMCPMC5505104
OpenAlexW2606724932

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.