Evidence map›Paper›PMID 28694447›Full record

ArticleScientific reports2017

Impacts of Early Life Stress on the Methylome and Transcriptome of Atlantic Salmon.

Hooman K Moghadam, Hanne Johnsen, Nicholas Robinson, Øivind Andersen, Even H Jørgensen, Helge K Johnsen, Vegar J Bæhr, Helge Tveiten

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
10.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
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  11. Early life stress causes persistent impacts on the microbiome of Atlantic salmon.Comparative biochemistry and physiology. Part D, Genomics & proteomics · 2021
    Article
  12. Article
  13. Article
  14. Early-life stress influences ion balance in developing zebrafish (Danio rerio).Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2021
    Article
  15. Article
  16. Article
  17. Stearoyl-CoA desaturase (Epigenetics · 2020
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Hooman K MoghadamNofima AS, Osloveien 1, NO-1433, Ås, Norway. hooman.moghadam@nofima.no.
Hanne JohnsenNofima AS, Muninbakken 9-13, NO-9291, Tromsø, Norway.
Nicholas RobinsonNofima AS, Osloveien 1, NO-1433, Ås, Norway.
Øivind AndersenNofima AS, Osloveien 1, NO-1433, Ås, Norway.
Even H JørgensenDepartment of Arctic & Marine Biology, University of Tromsø, NO-9037, Tromsø, Norway.
Helge K JohnsenNorwegian College of Fishery Science, BFE, University of Tromsø, NO-9037, Tromsø, Norway.
Vegar J BæhrDepartment of Arctic & Marine Biology, University of Tromsø, NO-9037, Tromsø, Norway.
Helge TveitenNofima AS, Muninbakken 9-13, NO-9291, Tromsø, Norway.
UiT The Arctic University of Norway · NOFafo Foundation · NONofima · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Exposure to environmental stressors during early-life stages can change the rate and timing of various developmental processes. Epigenetic marks affecting transcriptional regulation can be altered by such environmental stimuli. To assess how stress might affect the methylome and transcriptome in salmon, fish were treated using cold-shock and air-exposure from the eye-stage until start-feeding. The fish were either stressed prior to hatching (E), post-hatching (PH), pre- and post-hatching (EPH) or not stressed (CO). Assessing transcriptional abundances just prior to start feeding, E and PH individuals were found to have modified the expression of thousands of genes, many with important functions in developmental processes. The EPH individuals however, showed expression similar to those of CO, suggesting an adaptive response to extended periods of stress. The methylome of stressed individuals differed from that of the CO, suggesting the importance of environment in shaping methylation signatures. Through integration of methylation with transcription, we identified bases with potential regulatory functions, some 10s of kb away from the targeted genes. We then followed fish growth for an additional year. Individuals in EPH showed superior growth compared to other treatment groups, highlighting how stress can potentially have long-lasting effects on an organism's ability to adapt to environmental perturbations.

Indexed as

DNA MethylationStress, PhysiologicalAdaptation, PhysiologicalAirAnimalsCold-Shock ResponseFish ProteinsGene Expression ProfilingGene Expression Regulation, DevelopmentalMolecular Sequence AnnotationSalmo salarSequence Analysis, RNAFish Proteins

Identifiers

PMID28694447
PMCPMC5504078
OpenAlexW2730686903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.