Evidence map›Paper›PMID 28694326›Full record

ArticleBlood2017

Genomic analysis of 220 CTCLs identifies a novel recurrent gain-of-function alteration in RLTPR (p.Q575E).

Joonhee Park, Jingyi Yang, Alexander T Wenzel, Akshaya Ramachandran, Wung J Lee, Jay C Daniels, Juhyun Kim, Estela Martinez-Escala, Nduka Amankulor, Barbara Pro and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed, 4 pooled it
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 4 syntheses or guidelines pooled it, 168 citations in OpenAlex.

  1. A genetic profiling guideline to support diagnosis and clinical management of lymphomas.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Guideline
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  18. The monogenic landscape of human infectious diseases.The Journal of allergy and clinical immunology · 2025
    Review
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34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Joonhee ParkDepartment of Dermatology and.ORCID 0000-0001-6209-6923
Jingyi YangDepartment of Dermatology and.ORCID 0000-0002-6204-4039
Alexander T WenzelDepartment of Dermatology and.
Akshaya RamachandranDepartment of Dermatology and.
Wung J LeeDepartment of Dermatology and.
Jay C DanielsDepartment of Dermatology and.ORCID 0000-0003-4022-6795
Juhyun KimDepartment of Dermatology and.
Estela Martinez-EscalaDivision of Dermatopathology, Department of Dermatology, Northwestern University, Chicago, IL.ORCID 0000-0003-3736-8864
Nduka AmankulorDepartment of Neurological Surgery, University of Pittsburgh Medical Center, Pittsburgh, PA.
Barbara ProRobert H. Lurie Comprehensive Cancer Center and.
Joan GuitartDivision of Dermatopathology, Department of Dermatology, Northwestern University, Chicago, IL.
Marc L MendilloDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL.ORCID 0000-0001-8128-0128
Jeffrey N SavasDepartment of Neurology, Northwestern University Feinberg School of Medicine, Chicago, IL.ORCID 0000-0002-8173-5580
Titus J BoggonDepartment of Pharmacology and.ORCID 0000-0003-2862-1637
Jaehyuk ChoiDepartment of Dermatology and.ORCID 0000-0003-2379-2226
Northwestern University · USRobert H. Lurie Comprehensive Cancer Center of Northwestern UniversityUniversity of Pittsburgh Medical Center · USYale University · US

Funding

Transforming the diagnosis and care of patients with CTCL using TCR sequencingR01CA203721 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI CLARK, RACHAEL ANN, KUPPER, THOMAS S. · 2016 to 2020
$3.4M
The Role of ZEB1 Mutations in Cutaneous T Cell LymphomaK08CA191019 · NCI · YALE UNIVERSITY · PI CHOI, JAEHYUK · 2015 to 2019
$760k
Elucidating the stress response regulatory networks that enable malignancyR00CA175293 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MENDILLO, MARC · 2016 to 2018
$747k
Proteome Biology of Noise Induced Hearing LossR00DC013805 · NIDCD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SAVAS, JEFFREY NICHOLAS · 2015 to 2017
$747k
NCI NIH HHS K08 CA191019NCI NIH HHS R00 CA175293NCI NIH HHS R01 CA203721NIDCD NIH HHS R00 DC013805
6 · The paper itself

Abstract

Cutaneous T-cell lymphoma (CTCL) is an incurable non-Hodgkin lymphoma of the skin-homing T cell. In early-stage disease, lesions are limited to the skin, but in later-stage disease, the tumor cells can escape into the blood, the lymph nodes, and at times the visceral organs. To clarify the genomic basis of CTCL, we performed genomic analysis of 220 CTCLs. Our analyses identify 55 putative driver genes, including 17 genes not previously implicated in CTCL. These novel mutations are predicted to affect chromatin (

Indexed as

GenomicsAmino Acid SequenceAmino Acid SubstitutionBase SequenceGenome, HumanHEK293 CellsHumansJurkat CellsLymphoma, T-Cell, CutaneousMicrofilament ProteinsMutationNF-kappa BOncogenesReceptors, Antigen, T-CellrhoA GTP-Binding ProteinSequence Analysis, DNACARMIL1 protein, humanMicrofilament ProteinsNF-kappa BReceptors, Antigen, T-CellrhoA GTP-Binding Protein

Identifiers

PMID28694326
PMCPMC5609333
OpenAlexW2736055102

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.