Evidence map›Paper›PMID 28694242›Full record

ArticleThe EMBO journal2017

Chromatin stiffening underlies enhanced locus mobility after DNA damage in budding yeast.

Sébastien Herbert, Alice Brion, Jean-Michel Arbona, Mickaël Lelek, Adeline Veillet, Benoît Lelandais, Jyotsana Parmar, Fabiola García Fernández, Etienne Almayrac, Yasmine Khalil and 3 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 78 citations in OpenAlex.

  1. The Role of Arp2/3 in End-Resection During DNA Double-Strand Break Repair.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
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  9. Multi-Scale Imaging of the Dynamic Organization of Chromatin.International journal of molecular sciences · 2023
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. DNA damage reduces heterogeneity and coherence of chromatin motions.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Molecular Link between DNA Damage Response and Microtubule Dynamics.International journal of molecular sciences · 2022
    Review
  17. The Impact of Space and Time on the Functional Output of the Genome.Cold Spring Harbor perspectives in biology · 2022
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Sébastien HerbertUnité Imagerie et Modélisation, Institut Pasteur, Paris, France.
Alice BrionEquipe Biologie et Dynamique des Chromosomes, Institut Universitaire d'Hématologie, Hôpital St. Louis, Paris, France.
Jean-Michel ArbonaUnité Imagerie et Modélisation, Institut Pasteur, Paris, France.
Mickaël LelekUnité Imagerie et Modélisation, Institut Pasteur, Paris, France.
Adeline VeilletEquipe Biologie et Dynamique des Chromosomes, Institut Universitaire d'Hématologie, Hôpital St. Louis, Paris, France.
Benoît LelandaisUnité Imagerie et Modélisation, Institut Pasteur, Paris, France.
Jyotsana ParmarUnité Imagerie et Modélisation, Institut Pasteur, Paris, France.
Fabiola García FernándezEquipe Biologie et Dynamique des Chromosomes, Institut Universitaire d'Hématologie, Hôpital St. Louis, Paris, France.
Etienne AlmayracEquipe Biologie et Dynamique des Chromosomes, Institut Universitaire d'Hématologie, Hôpital St. Louis, Paris, France.
Yasmine KhalilEquipe Biologie et Dynamique des Chromosomes, Institut Universitaire d'Hématologie, Hôpital St. Louis, Paris, France.
Eleonore BirgyEquipe Biologie et Dynamique des Chromosomes, Institut Universitaire d'Hématologie, Hôpital St. Louis, Paris, France.
Emmanuelle FabreEquipe Biologie et Dynamique des Chromosomes, Institut Universitaire d'Hématologie, Hôpital St. Louis, Paris, France emmanuelle-g.fabre@inserm.fr czimmer@pasteur.fr.ORCID 0000-0002-0009-4604
Christophe ZimmerUnité Imagerie et Modélisation, Institut Pasteur, Paris, France emmanuelle-g.fabre@inserm.fr czimmer@pasteur.fr.ORCID 0000-0001-9910-1589
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA double-strand breaks (DSBs) induce a cellular response that involves histone modifications and chromatin remodeling at the damaged site and increases chromosome dynamics both locally at the damaged site and globally in the nucleus. In parallel, it has become clear that the spatial organization and dynamics of chromosomes can be largely explained by the statistical properties of tethered, but randomly moving, polymer chains, characterized mainly by their rigidity and compaction. How these properties of chromatin are affected during DNA damage remains, however, unclear. Here, we use live cell microscopy to track chromatin loci and measure distances between loci on yeast chromosome IV in thousands of cells, in the presence or absence of genotoxic stress. We confirm that DSBs result in enhanced chromatin subdiffusion and show that intrachromosomal distances increase with DNA damage all along the chromosome. Our data can be explained by an increase in chromatin rigidity, but not by chromatin decondensation or centromeric untethering only. We provide evidence that chromatin stiffening is mediated in part by histone H2A phosphorylation. Our results support a genome-wide stiffening of the chromatin fiber as a consequence of DNA damage and as a novel mechanism underlying increased chromatin mobility.

Indexed as

Chromatin Assembly and DisassemblyDNA Breaks, Double-StrandedBleomycinChromatinDNA, FungalHistonesMutagensPhosphorylationSaccharomycetalesBleomycinChromatinDNA, FungalHistonesMutagensZeocinchromatin dynamicschromatin structureDNA damagepolymersyeast

Identifiers

PMID28694242
PMCPMC5579376
OpenAlexW2736244299

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.