Evidence map›Paper›PMID 28692529›Full record

Observational studyAIDS (London, England)2017

CYP2B6 genotypes and early efavirenz-based HIV treatment outcomes in Botswana.

Robert Gross, Scarlett L Bellamy, Bakgaki Ratshaa, Xiaoyan Han, Marijana Vujkovic, Richard Aplenc, Andrew P Steenhoff, Mosepele Mosepele, Ganesh Moorthy, Athena F Zuppa and 2 more

Abstract readObservational Study
In one paragraph

Observational study in AIDS (London, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Guideline
  3. Review
  4. Article
  5. Article
  6. Association ofPharmacogenomics and personalized medicine · 2021
    Article
  7. Review
  8. Heme oxygenase-1 promoter (GT)Neurology(R) neuroimmunology & neuroinflammation · 2020
    Article
  9. Review
  10. Observational
  11. Impact of Efavirenz Metabolism on Loss to Care in Older HIV+ Africans.European journal of drug metabolism and pharmacokinetics · 2019
    Observational
  12. Article
  13. Article
  14. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Robert GrossaDepartments of Medicine (Infectious Diseases) bEpidemiology cCenter for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Philadelphia dDepartment of Epidemiology and Biostatistics, Drexel University Dornsife School of Public Health, Philadelphia, Pennsylvania eBotswana -UPenn Partnership, Gaborone, Botswana fDepartment of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania gFaculty of Medicine, University of Botswana, Gaborone, Botswana hOffice of the Chancellor, Rutgers Biomedical and Health Sciences, Rutgers University New Brunswick, New Jersey, USA.
Scarlett L Bellamy
Bakgaki Ratshaa
Xiaoyan Han
Marijana Vujkovic
Richard Aplenc
Andrew P Steenhoff
Mosepele Mosepele
Ganesh Moorthy
Athena F Zuppa
Brian L Strom
Gregory P Bisson
Children's Hospital of Philadelphia · USUniversity of Pennsylvania · USBotswana Open University · BWDrexel University · USUniversity of Botswana · BW

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
Penn Mental Health AIDS Research CenterP30MH097488 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI Knashawn Hodge Morales · 2013 to 2026
$23.5M
Pharmacogenetics and HIV treatment outcomesR01MH080701 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI GROSS, ROBERT · 2009 to 2013
$2.6M
HIV Research Training Program for BotswanaD43TW009781 · FIC · UNIVERSITY OF PENNSYLVANIA · PI GROSS, ROBERT · 2014 to 2018
$1.7M
FIC NIH HHS D43 TW009781NIAID NIH HHS P30 AI045008NIMH NIH HHS P30 MH097488NIMH NIH HHS R01 MH080701
6 · The paper itself

Abstract

objectivesTo determine the association between cytochrome p450 2B6 genotypes and efavirenz-based HIV treatment outcomes.

designObservational cohort study of HIV-infected adults initiating efavirenz-based regimens in Botswana.

methodsThe primary endpoint was a composite of death or loss to care or HIV RNA more than 25 copies/ml at 6 months. CYP2B6 516G>T and 983T>C genotyping was done with Taqman Open Array platform. Adverse experiences were measured by using the Subject Experience Questionnaire. Metabolism alleles were included in logistic regression models of the composite endpoint.

resultsA total of 801 individuals included 406 (51%) men, median age 37 years, median baseline CD4 cell count 195 cells/μl, and plasma HIV RNA 4.9 log10 copies/ml. 288 (36%) reached the endpoint, including 34 (4%) deaths, 151 (19%) lost to care, 11 (1%) lost to the study, but alive and in care, and 92 (11%) with plasma HIV RNA more than 25 copies/ml. Metabolism variant alleles were common with 396 (49%) intermediate and 192 (24%) slow metabolizers. There were no statistically significant associations between metabolism and treatment endpoints. However, slower metabolism was associated with fewer adverse experiences.

conclusionSlow metabolism alleles were associated with lower efavirenz clearance but not any of the treatment endpoints. Slow efavirenz metabolism did not exacerbate central nervous system toxicity. These results should allay concern that slow efavirenz metabolism adversely impacts individuals in sub-Saharan African settings in which these alleles are common.

Indexed as

GenotypeAdultAgedAlkynesAnti-HIV AgentsBenzoxazinesBotswanaCyclopropanesCytochrome P-450 CYP2B6Drug-Related Side Effects and Adverse ReactionsFemaleGenotyping TechniquesHIV InfectionsHumansMaleMiddle AgedAlkynesAnti-HIV AgentsBenzoxazinesCyclopropanesCYP2B6 protein, humanCytochrome P-450 CYP2B6efavirenzRNA, Viral

Identifiers

PMID28692529
PMCPMC5612381
OpenAlexW2726913921

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.