Evidence map›Paper›PMID 28692404›Full record

ArticleRNA biology2017

One-step hot formamide extraction of RNA from Saccharomyces cerevisiae.

Daniel Shedlovskiy, Natalia Shcherbik, Dimitri G Pestov

Open access · hybridAbstract read
In one paragraph

Article in RNA biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
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  4. Rpl12 is a conserved ribophagy receptor.Nature cell biology · 2025
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  13. [Functional peptidomics analysis ofSe pu = Chinese journal of chromatography · 2023
    Article
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  15. Article
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  18. Heterogeneity of Starved Yeast Cells in IFFrontiers in microbiology · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Daniel Shedlovskiya Department of Cell Biology and Neuroscience , Rowan University School of Osteopathic Medicine , Stratford , NJ , USA.
Natalia Shcherbika Department of Cell Biology and Neuroscience , Rowan University School of Osteopathic Medicine , Stratford , NJ , USA.
Dimitri G Pestova Department of Cell Biology and Neuroscience , Rowan University School of Osteopathic Medicine , Stratford , NJ , USA.
Rowan University · US

Funding

Monitoring mechanisms in mammalian ribosome biogenesisR01GM074091 · NIGMS · UNIV OF MED/DENT NJ-SCH OSTEOPATHIC MED · PI PESTOV, DIMITRI G · 2005 to 2014
$2.4M
Translational Rescue Mechanisms in EukaryotesR01GM114308 · NIGMS · ROWAN UNIVERSITY SCHOOL/OSTEOPATHIC MED · PI SHCHERBIK, NATALIA · 2016 to 2020
$1.6M
NIGMS NIH HHS R01 GM114308
6 · The paper itself

Abstract

Current methods for isolating RNA from budding yeast require lengthy and laborious steps such as freezing and heating with phenol, homogenization with glass beads, or enzymatic digestion of the cell wall. Here, extraction with a solution of formamide and EDTA was adapted to isolate RNA from whole yeast cells through a rapid and easily scalable procedure that does not require mechanical cell lysis, phenol, or enzymes. RNA extracted with formamide-EDTA can be directly loaded on gels for electrophoretic analysis without alcohol precipitation. A simplified protocol for downstream DNase treatment and reverse transcription reaction is also included. The formamide-EDTA extraction of yeast RNA is faster, safer, and more economical than conventional methods, outperforms them in terms of total yield, and greatly increases throughput.

Indexed as

FormamidesEdetic AcidReverse Transcriptase Polymerase Chain ReactionRNA, FungalSaccharomyces cerevisiaeTemperatureEdetic AcidformamideFormamidesRNA, FungalFormamidehigh-throughputRNA isolationRT-PCR

Identifiers

PMID28692404
PMCPMC5731811
OpenAlexW2735042908

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.