Evidence map›Paper›PMID 28691784›Full record

ArticleAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics2017

Epigenome-wide association of PTSD from heterogeneous cohorts with a common multi-site analysis pipeline.

Andrew Ratanatharathorn, Marco P Boks, Adam X Maihofer, Allison E Aiello, Ananda B Amstadter, Allison E Ashley-Koch, Dewleen G Baker, Jean C Beckham, Evelyn Bromet, Michelle Dennis and 24 more

Abstract read
In one paragraph

Article in American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 8 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 8 syntheses or guidelines pooled it.

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  9. Article
  10. A longitudinal study of CLDN5 DNA methylation and PTSD.Journal of behavioral medicine · 2026
    Article
  11. Article
  12. Article
  13. Multi-ancestry epigenome wide association study of generalized anxiety disorder.medRxiv : the preprint server for health sciences · 2026
    Article
  14. Article
  15. Trauma Exposure, PTSD, and Methylation of the Blood Brain Barrier Claudin-5 Gene.medRxiv : the preprint server for health sciences · 2025
    Article
  16. Article
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Andrew RatanatharathornDepartment of Epidemiology, Columbia University, New York, New York.ORCID http://orcid.org/0000-0001-9855-0438
Marco P BoksBrain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, Netherlands.
Adam X MaihoferDepartment of Psychiatry, University of California San Diego, San Diego, California.
Allison E AielloDepartment of Epidemiology, UNC Chapel Hill, Chapel Hill, North Carolina.
Ananda B AmstadterDepartment of Psychiatry, Virginia Commonwealth University, Richmond, Virginia.
Allison E Ashley-KochDuke Molecular Physiology Institute, Durham, North Carolina.
Dewleen G BakerDepartment of Psychiatry, University of California San Diego, San Diego, California.
Jean C BeckhamMental Illness Research, Education, and Clinical Center, VA Mid-Atlantic, Durham, North Carolina.
Evelyn BrometEpidemiology Research Group, State University of New York, New York.
Michelle DennisMental Illness Research, Education, and Clinical Center, VA Mid-Atlantic, Durham, North Carolina.
Melanie E GarrettDuke Molecular Physiology Institute, Durham, North Carolina.
Elbert GeuzeBrain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, Netherlands.
Guia GuffantiNeurobiology of Fear Laboratory, McLean Hospital, Belmont, Massachusetts.
Michael A HauserDuke Molecular Physiology Institute, Durham, North Carolina.
Varun KilaruDepartment of Gynecology and Obstetrics, Emory University, Atlanta, Georgia.
Nathan A KimbrelMental Illness Research, Education, and Clinical Center, VA Mid-Atlantic, Durham, North Carolina.
Karestan C KoenenDepartment of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts.
Pei-Fen KuanDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, New York.
Mark W LogueDepartment of Medicine (Biomedical Genetics), Boston University, Boston, Massachusetts.
Benjamin J LuftDepartment of Medicine, State University of New York, New York.
Mark W MillerVA Boston Healthcare System, Boston, Massachusetts.
Colter MitchellInstitute for Social Research, University of Michigan, Ann Arbor, Michigan.
Nicole R NugentDepartment of Pediatric Research, Psychiatry and Human Behavior, Brown University, Providence, Rhode Island.
Kerry J ResslerNeurobiology of Fear Laboratory, McLean Hospital, Belmont, Massachusetts.
Bart P F RuttenDepartment of Psychiatry and Neuropsychology, School for Mental Health and Neuroscience, Maastricht University Medical Centre, Maastricht,, Limburg, Netherlands.
Murray B SteinDepartment of Psychiatry, University of California San Diego, San Diego, California.ORCID http://orcid.org/0000-0001-9564-2871
Eric VermettenBrain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, Netherlands.
Christiaan H VinkersBrain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, Netherlands.
Nagy A YoussefDepartment of Psychiatry and Human Behavior and Office of Academic Affairs, Medical College of Georgia at Augusta University, Augusta, Georgia.
VA Mid-Atlantic MIRECC WorkgroupMental Illness Research, Education, and Clinical Center, VA Mid-Atlantic, Durham, North Carolina.
PGC PTSD Epigenetics Workgroup
Monica UddinDepartment of Psychology, University of Illinois Urbana-Champaign, Urbana, Illinois.
Caroline M NievergeltDepartment of Psychiatry, University of California San Diego, San Diego, California.
Alicia K SmithDepartment of Gynecology and Obstetrics, Emory University, Atlanta, Georgia.ORCID http://orcid.org/0000-0002-8537-5156

Funding

Research Services CoreP2CHD050924 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAREN B GUZZO · 2015 to 2026
$9.6M
Genetic and Trauma-Related Risk Factors for PTSDR01MH071537 · NIMH · EMORY UNIVERSITY · PI RESSLER, KERRY J. · 2005 to 2014
$8.5M
Psychiatric Genomics Consortium for PTSDR01MH106595 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KARESTAN C KOENEN, Caroline M Nievergelt · 2016 to 2026
$8.4M
The Impact of Traumatic Stress on the Methylome: implications for PTSDR01MH108826 · NIMH · EMORY UNIVERSITY · PI LOGUE, MARK W, NIEVERGELT, CAROLINE M · 2016 to 2024
$5.8M
Ecologic Stressors, PTSD, and Drug Use in DetroitR01DA022720 · NIDA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI AIELLO, ALLISON E · 2007 to 2011
$4.7M
5/7 Psychiatric Genomics Consortium: Finding actionable variationU01MH109514 · NIMH · CARDIFF UNIVERSITY · PI O'DONOVAN, MICHAEL · 2016 to 2020
$2.9M
Genomic Predictors of Combat Stress Vulnerability and ResilienceR01MH093500 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NIEVERGELT, CAROLINE M · 2011 to 2013
$2.7M
3/7 Psychiatric Genomics Consortium: Finding actionable variationU01MH109536 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHARNEY, ALEXANDER W, HUCKINS, LAURA MARIANNE · 2016 to 2020
$2.7M
Epigenetic Mechanisms of T Cell Dysregulation in PTSDR01AI129788 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI NAGARKATTI, MITZI · 2017 to 2021
$2.4M
Genetic and estrogen-dependent regulation of the human PAC1R receptor and PTSDR01MH096764 · NIMH · MCLEAN HOSPITAL · PI RESSLER, KERRY J. · 2012 to 2016
$2.1M
Deciphering Biological Linkages Between PTSD and Respiratory Disease in WTC RespoU01OH010718 · OH · STATE UNIVERSITY NEW YORK STONY BROOK · PI LUFT, BENJAMIN J · 2014 to 2015
$2.0M
The Genetics of Negative Conflict BehaviorR01MH079806 · NIMH · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MILLER, MARK W · 2007 to 2011
$1.5M
BLRD VA I01 BX002150BLRD VA I01 BX002577BLRD VA IK6 BX003777CSRD VA I01 CX000431CSRD VA IK2 CX000525NIAID NIH HHS R01 AI129788NICHD NIH HHS P2C HD050924NICHD NIH HHS R21 HD088931NIDA NIH HHS R01 DA022720NIMH NIH HHS R01 MH071537NIMH NIH HHS R01 MH079806NIMH NIH HHS R01 MH093500NIMH NIH HHS R01 MH096764NIMH NIH HHS R01 MH106595NIMH NIH HHS R01 MH108826NIMH NIH HHS R21 MH112956NIMH NIH HHS R56 MH071537NIMH NIH HHS RC1 MH088283NIMH NIH HHS U01 MH109514NIMH NIH HHS U01 MH109536NIOSH CDC HHS U01 OH010416NIOSH CDC HHS U01 OH010718
6 · The paper itself

Abstract

Compelling evidence suggests that epigenetic mechanisms such as DNA methylation play a role in stress regulation and in the etiologic basis of stress related disorders such as Post traumatic Stress Disorder (PTSD). Here we describe the purpose and methods of an international consortium that was developed to study the role of epigenetics in PTSD. Inspired by the approach used in the Psychiatric Genomics Consortium, we brought together investigators representing seven cohorts with a collective sample size of N = 1147 that included detailed information on trauma exposure, PTSD symptoms, and genome-wide DNA methylation data. The objective of this consortium is to increase the analytical sample size by pooling data and combining expertise so that DNA methylation patterns associated with PTSD can be identified. Several quality control and analytical pipelines were evaluated for their control of genomic inflation and technical artifacts with a joint analysis procedure established to derive comparable data over the cohorts for meta-analysis. We propose methods to deal with ancestry population stratification and type I error inflation and discuss the advantages and disadvantages of applying robust error estimates. To evaluate our pipeline, we report results from an epigenome-wide association study (EWAS) of age, which is a well-characterized phenotype with known epigenetic associations. Overall, while EWAS are highly complex and subject to similar challenges as genome-wide association studies (GWAS), we demonstrate that an epigenetic meta-analysis with a relatively modest sample size can be well-powered to identify epigenetic associations. Our pipeline can be used as a framework for consortium efforts for EWAS.

Indexed as

EpigenomicsGenome-Wide Association StudyAdultCohort StudiesDNA MethylationFemaleGenetic Predisposition to DiseaseGenomicsHumansMaleMiddle AgedPhenotypeStress Disorders, Post-TraumaticEWASmeta-analysisstresstrauma

Identifiers

PMID28691784
PMCPMC5592721

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.