Evidence map›Paper›PMID 28689813›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]

Combination of commercially available molecular assays and culture based methods in diagnosis of tuberculosis and drug resistant tuberculosis.

Lamprini Gkaravela, Matthaios Papadimitriou-Olivgeris, Antigoni Foka, Fevronia Kolonitsiou, Anastasia Spiliopoulou, Nikolaos Charokopos, Apostolos Voulgaridis, Maria Tsiamita, Markos Marangos, Evangelos D Anastassiou and 1 more

Abstract readEvaluation Study
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Prevalence ofJournal of clinical tuberculosis and other mycobacterial diseases · 2023
    Article
  2. Revisiting the methods for detectingAccess microbiology · 2021
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lamprini GkaravelaDepartment of Microbiology, School of Medicine, University of Patras, Rion, Patras, Greece.
Matthaios Papadimitriou-OlivgerisDivision of Infectious Diseases, School of Medicine, University of Patras, Rion, Patras, Greece.
Antigoni FokaDepartment of Microbiology, School of Medicine, University of Patras, Rion, Patras, Greece.
Fevronia KolonitsiouDepartment of Microbiology, School of Medicine, University of Patras, Rion, Patras, Greece.
Anastasia SpiliopoulouDepartment of Microbiology, School of Medicine, University of Patras, Rion, Patras, Greece.
Nikolaos CharokoposDepartment of Pulmonology, Regional General Hospital of Pirgos, Pirgos, Greece.
Apostolos VoulgaridisDepartment of Pulmonology, University General Hospital of Patras, Rion, Patras, Greece.
Maria TsiamitaDepartment of Pulmonology, University General Hospital of Patras, Rion, Patras, Greece.
Markos MarangosDivision of Infectious Diseases, School of Medicine, University of Patras, Rion, Patras, Greece.
Evangelos D AnastassiouDepartment of Microbiology, School of Medicine, University of Patras, Rion, Patras, Greece.
Iris SpiliopoulouDepartment of Microbiology, School of Medicine, University of Patras, Rion, Patras, Greece. Electronic address: spiliopl@upatras.gr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Early diagnosis of tuberculosis is of major clinical importance. Among 4733 clinical specimens collected from 3363 patients and subjected to Ziehl-Neelsen microscopy, 4109 were inoculated onto Löwenstein-Jensen slants and 3139 in Bactec/9000MB. Polymerase Chain Reaction (PCR) was performed in 3139 specimens, whereas, a genotypic assay was directly applied in 93 Mycobacterium tuberculosis complex PCR-positive for isoniazid and rifampicin resistance detection specimens (GenoType MTBDRplus). Recovered M. tuberculosis isolates (64) as well as, 21 more sent from Regional Hospitals were tested for antimycobacterial resistance with a phenotypic (manual MGIT-SIRE) and a genotypic assay (GenoType MTBDRplus). PCR in the clinical specimens showed excellent specificity (97.4%) and accuracy (96.8%), good sensitivity (70.4%), but low positive predictive value (40.3%). MGIT-SIRE performed to M. tuberculosis did not confer a reliable result in 16 isolates. Of the remaining 69 isolates, 15 were resistant to streptomycin, seven to isoniazid, seven to ethambutol and five to rifampicin. GenoType MTBDRplus correctly detected isoniazid (seven) and rifampicin-resistant M. tuberculosis strains (five), showing an excellent performance overall (100%). Susceptibility results by the molecular assay applied directly to clinical specimens were identical to those obtained from recovered isolates of the corresponding patients. Combining molecular and conventional methods greatly contribute to early diagnosis and accurate susceptibility testing of tuberculosis.

Indexed as

Antitubercular AgentsCulture TechniquesDrug Resistance, BacterialGenotypeHumansMicrobial Sensitivity TestsMolecular Diagnostic TechniquesMycobacterium tuberculosisTuberculosis, Multidrug-ResistantTuberculosis, PulmonaryAntitubercular AgentsGenoType MTBDRplusMycobacterium tuberculosisPCR

Identifiers

PMID28689813
PMCPMC5628296

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.