Evidence map›Paper›PMID 28688220›Full record

ArticleJournal of thrombosis and haemostasis : JTH2017

Assessment of the protein interaction between coagulation factor XII and corn trypsin inhibitor by molecular docking and biochemical validation.

B K Hamad, M Pathak, R Manna, P M Fischer, J Emsley, L V Dekker

Open access · hybridAbstract readValidation StudyVideo-Audio Media
In one paragraph

Article in Journal of thrombosis and haemostasis : JTH, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

B K HamadSchool of Pharmacy, Centre for Biomolecular Sciences, University of Nottingham, Nottingham, UK.
M PathakSchool of Pharmacy, Centre for Biomolecular Sciences, University of Nottingham, Nottingham, UK.
R MannaSchool of Pharmacy, Centre for Biomolecular Sciences, University of Nottingham, Nottingham, UK.
P M FischerSchool of Pharmacy, Centre for Biomolecular Sciences, University of Nottingham, Nottingham, UK.
J EmsleySchool of Pharmacy, Centre for Biomolecular Sciences, University of Nottingham, Nottingham, UK.
L V DekkerSchool of Pharmacy, Centre for Biomolecular Sciences, University of Nottingham, Nottingham, UK.ORCID 0000-0001-5247-3297
University of Nottingham · GB

Funding

FIBRILLIN EXPRESSION IN VASCULAR SMOOTH MUSCLE CELLSF32HL009025 · NHLBI · MOUNT SINAI SCHOOL OF MEDICINE OF CUNY · PI PANETTA, CARMELO J · 1994 to 1994
–
British Heart Foundation FS/11/61/28941British Heart Foundation PG/09/025/27136British Heart Foundation RG/12/9/29775
6 · The paper itself

Abstract

Essentials Corn Trypsin Inhibitor (CTI) is a selective inhibitor of coagulation Factor XII (FXII). Molecular modelling of the CTI-FXIIa complex suggested a canonical inhibitor binding mode. Mutagenesis revealed the CTI inhibitory loop and helices α1 and α2 mediate the interaction. This confirms that CTI inhibits FXII in canonical fashion and validates the molecular model. SUMMARY: Background Corn trypsin inhibitor (CTI) has selectivity for the serine proteases coagulation factor XII and trypsin. CTI is in widespread use as a reagent that specifically inhibits the intrinsic pathway of blood coagulation but not the extrinsic pathway. Objectives To investigate the molecular basis of FXII inhibition by CTI. Methods We performed molecular docking of CTI, using its known crystal structure, with a model of the activated FXII (FXIIa) protease domain. The interaction model was verified by use of a panel of recombinant CTI variants tested for their ability to inhibit FXIIa enzymatic activity in a substrate cleavage assay. Results The docking predicted that: (i) the CTI central inhibitory loop P1 Arg34 side chain forms a salt bridge with the FXIIa S1 pocket Asp189 side chain; (ii) Trp22 from CTI helix α1 interacts with the FXIIa S3 pocket; and (iii) Arg43 from CTI helix α2 forms a salt bridge with FXIIa H1 pocket Asp60A. CTI amino acid substitution R34A negated all inhibitory activity, whereas the G32W, L35A, W22A and R42A/R43A substitutions reduced activity by large degrees of 108-fold, 41-fold, 158-fold, and 100-fold, respectively; the R27A, W37A, W39A and R42A substitutions had no effect. Synthetic peptides spanning CTI residues 20-44 had inhibitory activity that was three-fold to 4000-fold less than that of full-length CTI. Conclusions The data confirm the validity of a canonical model of the FXIIa-CTI interaction, with helix α1 (Trp22), central inhibitory loop (Arg34) and helix α2 (Arg43) of CTI being required for effective binding by contacting the S1, S3 and H1 pockets of FXIIa, respectively.

Indexed as

Molecular Docking SimulationAnticoagulantsBlood CoagulationDose-Response Relationship, DrugFactor XIIIMutationPeptide FragmentsPlant ProteinsProtein BindingProtein Conformation, alpha-HelicalProtein Interaction Domains and MotifsRecombinant ProteinsSerine Proteinase InhibitorsStructure-Activity RelationshipAnticoagulantsFactor XIIIPeptide FragmentsPlant ProteinsRecombinant ProteinsSerine Proteinase Inhibitorstrypsin inhibitor, Zea mayscorn trypsin inhibitorfactor XIImolecular docking simulationserine proteasetrypsin

Identifiers

PMID28688220
PMCPMC5638086
OpenAlexW2725155510

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.