Evidence map›Paper›PMID 28687775›Full record

ArticleScientific reports2017

Integrated analysis of tobacco miRNA and mRNA expression profiles under PVY infection provids insight into tobacco-PVY interactions.

Yushuang Guo, Meng-Ao Jia, Yumei Yang, Linlin Zhan, Xiaofei Cheng, Jianyu Cai, Jie Zhang, Jie Yang, Tao Liu, Qiang Fu and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  4. Article
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  8. Overexpression of Nta-miR6155 confers resistance toFrontiers in plant science · 2023
    Article
  9. Insight into aphid mediatedFrontiers in microbiology · 2022
    Review
  10. Review
  11. Article
  12. Review
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  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Yushuang GuoKey Laboratory of Molecular Genetics, China National Tobacco Corporation, Guizhou Institute of Tobacco Science, Guiyang, Guizhou, 550083, P. R. China.
Meng-Ao JiaKey Laboratory of Molecular Genetics, China National Tobacco Corporation, Guizhou Institute of Tobacco Science, Guiyang, Guizhou, 550083, P. R. China. jiamengao@cau.edu.cn.
Yumei YangAnnoroad Gene Technology (Beijing) Co., Ltd, Beijing, 101100, P. R. China.
Linlin ZhanCollege of Agriculture and Food Science, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang, 311300, P. R. China.
Xiaofei ChengSchool of Life and Environmental science, Hangzhou Normal University, Hangzhou, Zhejiang, 311121, P. R. China.
Jianyu CaiCollege of Agriculture and Food Science, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang, 311300, P. R. China.
Jie ZhangKey Laboratory of Molecular Genetics, China National Tobacco Corporation, Guizhou Institute of Tobacco Science, Guiyang, Guizhou, 550083, P. R. China.
Jie YangAnnoroad Gene Technology (Beijing) Co., Ltd, Beijing, 101100, P. R. China.
Tao LiuAnnoroad Gene Technology (Beijing) Co., Ltd, Beijing, 101100, P. R. China.
Qiang FuKey Laboratory of Molecular Genetics, China National Tobacco Corporation, Guizhou Institute of Tobacco Science, Guiyang, Guizhou, 550083, P. R. China.
Jiehong ZhaoKey Laboratory of Molecular Genetics, China National Tobacco Corporation, Guizhou Institute of Tobacco Science, Guiyang, Guizhou, 550083, P. R. China.
Imran Haider ShamsiDepartment of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, P. R. China. drimran@zju.edu.cn.
China Tobacco · CNAnnoroad Gene Technology (China) · CNZhejiang A & F University · CNHangzhou Normal University · CNZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potato virus Y (PVY) is a globally and economically important pathogen of potato, tobacco, tomato and other staple crops and caused significant yield losses and reductions in quality.To explore the molecular PVY-host interactions, we analysed changes in the miRNA and mRNA profiles of tobacco in response to PVY infection. A total of 81 differentially expressed miRNAs belonging to 29 families and 8133 mRNAs were identified. The Gene Ontology (GO) enrichment analyses showed that genes encoding the DNA/RNA binding, catalytic activity and signalling molecules were all significantly enriched. Moreover, 88 miRNA-mRNA interaction pairs were identified through a combined analysis of the two datasets. We also found evidence showing that the virus-derived siRNAs (vsiRNAs) from the PVY genome target tobacco translationally controlled tumor protein (NtTCTP) mRNA and mediate plant resistance to PVY. Together, our findings revealed that both miRNA and mRNA expression patterns can be changed in response to PVY infection and novel vsiRNA-plant interactions that may regulate plant resistance to PVY. Both provide fresh insights into the virus-plant interactions.

Indexed as

Biomarkers, TumorDisease ResistanceGene OntologyGene Regulatory NetworksHost-Pathogen InteractionsMicroRNAsMolecular Sequence AnnotationNicotianaPlant DiseasesPlant ProteinsPotyvirusRNA, MessengerRNA, PlantRNA, Small InterferingRNA, ViralTumor Protein, Translationally-Controlled 1Biomarkers, TumorMicroRNAsPlant ProteinsRNA, MessengerRNA, PlantRNA, Small InterferingRNA, ViralTumor Protein, Translationally-Controlled 1

Identifiers

PMID28687775
PMCPMC5501784
OpenAlexW2734176292

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.