Evidence map›Paper›PMID 28687663›Full record

ArticleThe Journal of cell biology2017

A module for Rac temporal signal integration revealed with optogenetics.

Brian R Graziano, Delquin Gong, Karen E Anderson, Anne Pipathsouk, Anna R Goldberg, Orion D Weiner

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in The Journal of cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Proteins dance to the tune of light.Nature chemical biology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Neutrophils actively swell to potentiate rapid migration.bioRxiv : the preprint server for biology · 2024
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Brian R GrazianoCardiovascular Research Institute, University of California, San Francisco, San Francisco, CA.ORCID 0000-0003-1081-908X
Delquin GongCardiovascular Research Institute, University of California, San Francisco, San Francisco, CA.ORCID 0000-0001-8315-4926
Karen E AndersonThe Babraham Institute, Babraham, England, UK.ORCID 0000-0002-7394-6660
Anne PipathsoukCardiovascular Research Institute, University of California, San Francisco, San Francisco, CA.
Anna R GoldbergCardiovascular Research Institute, University of California, San Francisco, San Francisco, CA.
Orion D WeinerCardiovascular Research Institute, University of California, San Francisco, San Francisco, CA orion.weiner@ucsf.edu.ORCID 0000-0002-1778-6543
University of California, San Francisco · USBabraham Institute · GB

Funding

GENETICS OF EUCARYOTIC AND PROCARYOTIC ORGANISMST32GM007810 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ASHRAFI, KAVEH, NARLIKAR, GEETA J · 1985 to 2020
$15.1M
MOLECULAR AND CELLULAR BASIS OF CARDIOVASCULAR DISEASET32HL007731 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Brian L Black · 1992 to 2026
$12.4M
Cellular Decision Making Diversity SupplementR35GM118167 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Orion D Weiner · 2016 to 2026
$10.3M
Integrative Program in Complex Biological System (ipCBS)T32EB009383 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARSHALL, WALLACE, WEINER, ORION D · 2009 to 2022
$3.2M
NHLBI NIH HHS T32 HL007731NIBIB NIH HHS T32 EB009383NIGMS NIH HHS R35 GM118167NIGMS NIH HHS T32 GM007810
6 · The paper itself

Abstract

Sensory systems use adaptation to measure changes in signaling inputs rather than absolute levels of signaling inputs. Adaptation enables eukaryotic cells to directionally migrate over a large dynamic range of chemoattractant. Because of complex feedback interactions and redundancy, it has been difficult to define the portion or portions of eukaryotic chemotactic signaling networks that generate adaptation and identify the regulators of this process. In this study, we use a combination of optogenetic intracellular inputs, CRISPR-based knockouts, and pharmacological perturbations to probe the basis of neutrophil adaptation. We find that persistent, optogenetically driven phosphatidylinositol (3,4,5)-trisphosphate (PIP

Indexed as

Chemotaxis, LeukocyteOptogeneticsSecond Messenger SystemsCRISPR-Cas SystemsEnzyme ActivationFeedback, PhysiologicalGene TargetingGTPase-Activating ProteinsGuanine Nucleotide Exchange FactorsHEK293 CellsHL-60 CellsHumansMicroscopy, ConfocalMicroscopy, VideoNeutrophilsp21-Activated KinasesARHGAP15 protein, humanGTPase-Activating ProteinsGuanine Nucleotide Exchange Factorsp21-Activated Kinasesphosphatidylinositol 3,4,5-triphosphatePhosphatidylinositol 3-KinasePhosphatidylinositol PhosphatesPREX1 protein, humanProto-Oncogene Proteins c-aktrac GTP-Binding Proteins

Identifiers

PMID28687663
PMCPMC5551696
OpenAlexW2726317890

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.