Evidence map›Paper›PMID 28687644›Full record

ArticleApplied and environmental microbiology2017

Genome-Scale Model and Omics Analysis of Metabolic Capacities of

Noora Ottman, Mark Davids, Maria Suarez-Diez, Sjef Boeren, Peter J Schaap, Vitor A P Martins Dos Santos, Hauke Smidt, Clara Belzer, Willem M de Vos

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 159 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
159citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

159 citing papers in PubMed, 1 synthesis or guideline pooled it, 259 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Gut microbes · 2026
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  12. Review
  13. Biomolecules · 2026
    Review
  14. Article
  15. High stability of the genome ofMicrobiology spectrum · 2026
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

99 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Noora OttmanLaboratory of Microbiology, Wageningen University, Wageningen, the Netherlands.ORCID http://orcid.org/0000-0001-5011-9294
Mark DavidsLaboratory of Systems and Synthetic Biology, Wageningen University, Wageningen, the Netherlands.ORCID http://orcid.org/0000-0003-3081-9124
Maria Suarez-DiezLaboratory of Systems and Synthetic Biology, Wageningen University, Wageningen, the Netherlands.
Sjef BoerenLaboratory of Biochemistry, Wageningen University, Wageningen, the Netherlands.
Peter J SchaapLaboratory of Systems and Synthetic Biology, Wageningen University, Wageningen, the Netherlands.
Vitor A P Martins Dos SantosLaboratory of Systems and Synthetic Biology, Wageningen University, Wageningen, the Netherlands.
Hauke SmidtLaboratory of Microbiology, Wageningen University, Wageningen, the Netherlands.
Clara BelzerLaboratory of Microbiology, Wageningen University, Wageningen, the Netherlands.
Willem M de VosLaboratory of Microbiology, Wageningen University, Wageningen, the Netherlands willem.devos@wur.nl.
Wageningen University & Research · NLUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The composition and activity of the microbiota in the human gastrointestinal tract are primarily shaped by nutrients derived from either food or the host. Bacteria colonizing the mucus layer have evolved to use mucin as a carbon and energy source. One of the members of the mucosa-associated microbiota is

Indexed as

AnimalsBacterial ProteinsGenome, BacterialGlucoseIntestinal MucosaIntestinesMucinsProteomicsSwineVerrucomicrobiaBacterial ProteinsGlucoseMucinsacetateAkkermansiagut microbiotametabolic modelingmucinpropionateproteomicstranscriptomics

Identifiers

PMID28687644
PMCPMC5583483
OpenAlexW2729285740

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.