Evidence map›Paper›PMID 28686854›Full record

ArticleAmerican journal of human genetics2017

REST Final-Exon-Truncating Mutations Cause Hereditary Gingival Fibromatosis.

Yavuz Bayram, Janson J White, Nursel Elcioglu, Megan T Cho, Neda Zadeh, Asuman Gedikbasi, Sukru Palanduz, Sukru Ozturk, Kivanc Cefle, Ozgur Kasapcopur and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
11.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genetic Variants in theInternational journal of molecular sciences · 2024
    Article
  7. Article
  8. Surgical Management of Hereditary Gingival Fibromatosis: Case Series.Clinical, cosmetic and investigational dentistry · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. A novel geneeLife · 2022
    Article
  17. Article
  18. Review
  19. Article
  20. HGG advances · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 3 countries.

Yavuz BayramDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Janson J WhiteDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Nursel ElciogluDepartment of Pediatric Genetics, Marmara University School of Medicine, Istanbul 34899, Turkey; Eastern Mediterranean University School of Medicine, Cyprus, Mersin 10 99628, Turkey.
Megan T ChoGeneDx, 207 Perry Parkway, Gaithersburg, MD 20877, USA.
Neda ZadehGenetics Center, Orange, CA 92868, USA; Division of Medical Genetics, Children's Hospital of Orange County, Orange, CA 92868, USA.
Asuman GedikbasiDepartment of Internal Medicine, Division of Medical Genetics, Istanbul Medical Faculty, Istanbul University, Istanbul 34093, Turkey.
Sukru PalanduzDepartment of Internal Medicine, Division of Medical Genetics, Istanbul Medical Faculty, Istanbul University, Istanbul 34093, Turkey.
Sukru OzturkDepartment of Internal Medicine, Division of Medical Genetics, Istanbul Medical Faculty, Istanbul University, Istanbul 34093, Turkey.
Kivanc CefleDepartment of Internal Medicine, Division of Medical Genetics, Istanbul Medical Faculty, Istanbul University, Istanbul 34093, Turkey.
Ozgur KasapcopurDepartment of Child Rheumatology, Cerrahpasa Medical School, Istanbul University, Istanbul 34093, Turkey.
Zeynep Coban AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Davut PehlivanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA.
Amber BegtrupGeneDx, 207 Perry Parkway, Gaithersburg, MD 20877, USA.
Claudia M B CarvalhoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Ingrid Sophie PaineDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Ali MentesDepartment of Pediatric Dentistry, Faculty of Dentistry, Marmara University, Istanbul 34854, Turkey.
Kivanc Bektas-KayhanDepartment of Oral and Maxillofacial Surgery, Faculty of Dentistry, Istanbul University, Istanbul 34899, Turkey.
Ender KaracaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Baylor-Hopkins Center for Mendelian Genomics
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address: jlupski@bcm.edu.
Baylor College of Medicine · USIstanbul University · TRMarmara University · TRBaylor Genetics · USCenter for Inherited Blood Disorders · USTexas Children's Hospital · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
PROGRAM IN HUMAN MOLECULAR GENETICST32GM008307 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SHAULSKY, GAD · 1990 to 2020
$6.6M
Nonrecurrent rearrangements, genome architecture and neurodegenerative disease.R01NS058529 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2009 to 2017
$5.0M
NHGRI NIH HHS U54 HG003273NHGRI NIH HHS UM1 HG006542NIGMS NIH HHS T32 GM008307NINDS NIH HHS R01 NS058529
6 · The paper itself

Abstract

Hereditary gingival fibromatosis (HGF) is the most common genetic form of gingival fibromatosis that develops as a slowly progressive, benign, localized or generalized enlargement of keratinized gingiva. HGF is a genetically heterogeneous disorder and can be transmitted either as an autosomal-dominant or autosomal-recessive trait or appear sporadically. To date, four loci (2p22.1, 2p23.3-p22.3, 5q13-q22, and 11p15) have been mapped to autosomes and one gene (SOS1) has been associated with the HGF trait observed to segregate in a dominant inheritance pattern. Here we report 11 individuals with HGF from three unrelated families. Whole-exome sequencing (WES) revealed three different truncating mutations including two frameshifts and one nonsense variant in RE1-silencing transcription factor (REST) in the probands from all families and further genetic and genomic analyses confirmed the WES-identified findings. REST is a transcriptional repressor that is expressed throughout the body; it has different roles in different cellular contexts, such as oncogenic and tumor-suppressor functions and hematopoietic and cardiac differentiation. Here we show the consequences of germline final-exon-truncating mutations in REST for organismal development and the association with the HGF phenotype.

Indexed as

Genetic Predisposition to DiseaseAdolescentBase SequenceChromosome SegregationExonsFamilyFemaleFibromatosis, GingivalHumansMaleMiddle AgedMutationPedigreeRE1-Silencing Transcription FactorRepressor ProteinsRE1-Silencing Transcription FactorRepressor Proteinsgingival fibromatosismosaic mutationnonsense-mediated decayRE1-silencing transcription factorRESTwhole-exome sequencing

Identifiers

PMID28686854
PMCPMC5501868
OpenAlexW2731570147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.