Evidence map›Paper›PMID 28686847›Full record

ArticleSLAS discovery : advancing life sciences R & D2018

Development and Implementation of an HTS-Compatible Assay for the Discovery of Selective Small-Molecule Ligands for Pre-microRNAs.

Daniel A Lorenz, Steve Vander Roest, Martha J Larsen, Amanda L Garner

Open access · hybridAbstract read
In one paragraph

Article in SLAS discovery : advancing life sciences R & D, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. New approaches to target RNA binding proteins.Current opinion in chemical biology · 2021
    Review
  11. Article
  12. The 2020SLAS discovery : advancing life sciences R & D · 2021
    Article
  13. Article
  14. Target-Directed Approaches for Screening Small Molecules against RNA Targets.SLAS discovery : advancing life sciences R & D · 2020
    Review
  15. RNA-Targeted Therapies and High-Throughput Screening Methods.International journal of molecular sciences · 2020
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. cat-ELCCA: catalyzing drug discovery through click chemistry.Chemical communications (Cambridge, England) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Daniel A Lorenz1 Program in Chemical Biology, University of Michigan, Ann Arbor, Michigan, USA.
Steve Vander Roest3 Center for Chemical Genomics, Life Sciences Institute, University of Michigan, Ann Arbor, Michigan, USA.
Martha J Larsen3 Center for Chemical Genomics, Life Sciences Institute, University of Michigan, Ann Arbor, Michigan, USA.
Amanda L Garner1 Program in Chemical Biology, University of Michigan, Ann Arbor, Michigan, USA.
University of Michigan–Ann Arbor · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
Discovery of Selective Small Molecule Probes for pre-microRNAsR01GM118329 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARNER, AMANDA · 2016 to 2018
$930k
NCI NIH HHS P30 CA046592NIGMS NIH HHS R01 GM118329
6 · The paper itself

Abstract

microRNAs (miRNAs) are small gene regulatory RNAs, and their expression has been found to be dysregulated in a number of human diseases. To facilitate the discovery of small molecules capable of selectively modulating the activity of a specific miRNA, we have utilized new high-throughput screening technology targeting Dicer-mediated pre-miRNA maturation. Pilot screening of ~50,000 small molecules and ~33,000 natural product extract libraries against pre-miR-21 processing indicated the potential of our assay for this goal, yielding a campaign Z' factor of 0.52 and an average plate signal-to-background (S/B) ratio of 13. Using two-dimensional screening against a second pre-miRNA, pre-let-7d, we evaluated the selectivity of confirmed hits. The results presented demonstrate how high-throughput screening can be used to identify selective small molecules for a target RNA.

Indexed as

High-Throughput Screening AssaysLigandsSmall Molecule LibrariesDrug DiscoveryGene Expression RegulationMicroRNAsMolecular StructureReproducibility of ResultsRNA PrecursorsWorkflowLigandsMicroRNAsRNA PrecursorsSmall Molecule Librariescat-ELCCADicerhigh-throughput screeningmicroRNAs

Identifiers

PMID28686847
PMCPMC5797708
OpenAlexW2778307495

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.