Evidence map›Paper›PMID 28686713›Full record

ArticlePloS one2017

Transcriptome-wide comparison of the impact of Atoh1 and miR-183 family on pluripotent stem cells and multipotent otic progenitor cells.

Michael Ebeid, Prashanth Sripal, Jason Pecka, Kirk W Beisel, Kelvin Kwan, Garrett A Soukup

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Michael EbeidDepartment of Biomedical Sciences, Creighton University, Omaha, Nebraska, United States of America.
Prashanth SripalDepartment of Biomedical Sciences, Creighton University, Omaha, Nebraska, United States of America.
Jason PeckaDepartment of Biomedical Sciences, Creighton University, Omaha, Nebraska, United States of America.
Kirk W BeiselDepartment of Biomedical Sciences, Creighton University, Omaha, Nebraska, United States of America.
Kelvin KwanDepartment of Cell Biology and Neuroscience, W. M. Keck Center for Collaborative Neuroscience, Rutgers University, Piscataway, New Jersey, United States of America.
Garrett A SoukupDepartment of Biomedical Sciences, Creighton University, Omaha, Nebraska, United States of America.ORCID http://orcid.org/0000-0002-1406-4713
Creighton University · USRutgers, The State University of New Jersey · US

Funding

The Molecular Biology of Neurosurgery SystemsP20GM103471 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI SMITH, SHELLEY D · 2012 to 2013
$4.1M
Role of microRNAs in mammalian ear development and neurosensory specificationR01DC009025 · NIDCD · CREIGHTON UNIVERSITY · PI SOUKUP, GARRETT ANDREW · 2009 to 2013
$1.7M
NIDCD NIH HHS R01 DC009025NIGMS NIH HHS P20 GM103471
6 · The paper itself

Abstract

Over 5% of the global population suffers from disabling hearing loss caused by multiple factors including aging, noise exposure, genetic predisposition, or use of ototoxic drugs. Sensorineural hearing loss is often caused by the loss of sensory hair cells (HCs) of the inner ear. A barrier to hearing restoration after HC loss is the limited ability of mammalian auditory HCs to spontaneously regenerate. Understanding the molecular mechanisms orchestrating HC development is expected to facilitate cell replacement therapies. Multiple events are known to be essential for proper HC development including the expression of Atoh1 transcription factor and the miR-183 family. We have developed a series of vectors expressing the miR-183 family and/or Atoh1 that was used to transfect two different developmental cell models: pluripotent mouse embryonic stem cells (mESCs) and immortalized multipotent otic progenitor (iMOP) cells representing an advanced developmental stage. Transcriptome profiling of transfected cells show that the impact of Atoh1 is contextually dependent with more HC-specific effects on iMOP cells. miR-183 family expression in combination with Atoh1 not only appears to fine tune gene expression in favor of HC fate, but is also required for the expression of some HC-specific genes. Overall, the work provides novel insight into the combined role of Atoh1 and the miR-183 family during HC development that may ultimately inform strategies to promote HC regeneration or maintenance.

Indexed as

TranscriptomeAnimalsBasic Helix-Loop-Helix ProteinsCell LineGene Expression ProfilingGene Expression Regulation, DevelopmentalGenetic VectorsHair Cells, Auditory, InnerMiceMicroarray AnalysisMicroRNAsMouse Embryonic Stem CellsMultipotent Stem CellsPluripotent Stem CellsSignal TransductionTransfectionAtoh1 protein, mouseBasic Helix-Loop-Helix ProteinsMicroRNAsMirn183 microRNA, mouse

Identifiers

PMID28686713
PMCPMC5501616
OpenAlexW2725369241

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.