Evidence map›Paper›PMID 28686696›Full record

ArticlePloS one2017

Morphological and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira pseudonana and other centric diatoms.

Eric R Moore, Briana S Bullington, Alexandra J Weisberg, Yuan Jiang, Jeff Chang, Kimberly H Halsey

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

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  10. The unity and diversity of the ciliary central apparatus.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Eric R MooreDepartment of Microbiology, Oregon State University, Corvallis, Oregon, United States of America.
Briana S BullingtonDepartment of Microbiology, Oregon State University, Corvallis, Oregon, United States of America.
Alexandra J WeisbergDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.
Yuan JiangDepartment of Statistics, Oregon State University, Corvallis, Oregon, United States of America.
Jeff ChangDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.
Kimberly H HalseyDepartment of Microbiology, Oregon State University, Corvallis, Oregon, United States of America.ORCID http://orcid.org/0000-0002-1407-0777
Oregon State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The reproductive strategy of diatoms includes asexual and sexual phases, but in many species, including the model centric diatom Thalassiosira pseudonana, sexual reproduction has never been observed. Furthermore, the environmental factors that trigger sexual reproduction in diatoms are not understood. Although genome sequences of a few diatoms are available, little is known about the molecular basis for sexual reproduction. Here we show that ammonium reliably induces the key sexual morphologies, including oogonia, auxospores, and spermatogonia, in two strains of T. pseudonana, T. weissflogii, and Cyclotella cryptica. RNA sequencing revealed 1,274 genes whose expression patterns changed when T. pseudonana was induced into sexual reproduction by ammonium. Some of the induced genes are linked to meiosis or encode flagellar structures of heterokont and cryptophyte algae. The identification of ammonium as an environmental trigger suggests an unexpected link between diatom bloom dynamics and strategies for enhancing population genetic diversity.

Indexed as

TranscriptomeAmmonium CompoundsDiatomsEvolution, MolecularGene Expression ProfilingGenetic VariationGerm CellsPhylogenyReproductionSequence Analysis, RNASporesAmmonium Compounds

Identifiers

PMID28686696
PMCPMC5501676
OpenAlexW2949270627

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.