Evidence map›Paper›PMID 28686623›Full record

ArticlePLoS genetics2017

Xist RNA repeat E is essential for ASH2L recruitment to the inactive X and regulates histone modifications and escape gene expression.

Minghui Yue, Akiyo Ogawa, Norishige Yamada, John Lalith Charles Richard, Artem Barski, Yuya Ogawa

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. Xist in X chromosome inactivation: mechanisms and disease relevance.Cell communication and signaling : CCS · 2025
    Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Long noncoding RNAGenes & diseases · 2022
    Review
  10. Review
  11. Article
  12. Article
  13. The complex activities of the SET1/MLL complex core subunits in development and disease.Biochimica et biophysica acta. Gene regulatory mechanisms · 2020
    Review
  14. The B-side ofF1000Research · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. X Inactivation and Escape: Epigenetic and Structural Features.Frontiers in cell and developmental biology · 2019
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Minghui YueDivision of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Akiyo OgawaDivision of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Norishige YamadaDivision of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
John Lalith Charles RichardDivision of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.ORCID http://orcid.org/0000-0002-1186-6390
Artem BarskiDepartment of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America.
Yuya OgawaDivision of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.ORCID http://orcid.org/0000-0003-4416-7753
Cincinnati Children's Hospital Medical Center · US

Funding

Tissue Repository CoreP30AR070549 · NIAMS · CINCINNATI CHILDRENS HOSP MED CTR · PI Matthew Tyson Weirauch · 2016 to 2026
$7.7M
Direct Epigenetic Reprogramming of T CellsDP2GM119134 · NIGMS · CINCINNATI CHILDRENS HOSP MED CTR · PI BARSKI, ARTEM · 2015 to 2015
$2.3M
Organization of the inactive X-chromosomeR01GM102184 · NIGMS · CINCINNATI CHILDRENS HOSP MED CTR · PI OGAWA, YUYA · 2012 to 2016
$1.4M
NIAMS NIH HHS P30 AR070549NIGMS NIH HHS DP2 GM119134NIGMS NIH HHS R01 GM102184
6 · The paper itself

Abstract

Long non-coding RNA Xist plays a crucial role in establishing and maintaining X-chromosome inactivation (XCI) which is a paradigm of long non-coding RNA-mediated gene regulation. Xist has Xist-specific repeat elements A-F which are conserved among eutherian mammals, underscoring their functional importance. Here we report that Xist RNA repeat E, a conserved Xist repeat element in the Xist exon 7, interacts with ASH2L and contributes to maintenance of escape gene expression level on the inactive X-chromosome (Xi) during XCI. The Xist repeat E-deletion mutant female ES cells show the depletion of ASH2L from the Xi upon differentiation. Furthermore, a subset of escape genes exhibits unexpectedly higher expression in the repeat E mutant cells than the cells expressing wildtype Xist during X-inactivation, whereas the silencing of X-linked non-escape genes is not affected. We discuss the implications of these results to understand the role of ASH2L and Xist repeat E for histone modifications and escape gene regulation during random X-chromosome inactivation.

Indexed as

Transcription, GeneticAnimalsCell DifferentiationDNA-Binding ProteinsEmbryonic Stem CellsExonsGene DeletionGene Expression RegulationGene SilencingHistone CodeMiceNuclear ProteinsRNA, Long NoncodingTranscription FactorsX ChromosomeX Chromosome InactivationAsh2l protein, mouseDNA-Binding ProteinsNuclear ProteinsRNA, Long NoncodingTranscription FactorsXIST non-coding RNA

Identifiers

PMID28686623
PMCPMC5521851
OpenAlexW2726090421

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.