Evidence map›Paper›PMID 28686208›Full record

ArticleInternational journal of molecular sciences2017

Structural Elements Recognized by Abacavir-Induced T Cells.

Daniel Yerly, Yuri Andreiw Pompeu, Ryan J Schutte, Klara K Eriksson, Anette Strhyn, Austin W Bracey, Soren Buus, David A Ostrov

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Drug hypersensitivity reactions: review of the state of the science for prediction and diagnosis.Toxicological sciences : an official journal of the Society of Toxicology · 2024
    Review
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  7. Review
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  12. Article
  13. HLA Association with Drug-Induced Adverse Reactions.Journal of immunology research · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Daniel YerlyDepartment of Rheumatology, Immunology and Allergology, University Hospital of Bern, 3010 Bern, Switzerland. daniel.yerly@allergy.unibe.ch.
Yuri Andreiw PompeuHarvard Medical School, Cambridge, MA 02138, USA. Yuri_Pompeu@hms.harvard.edu.
Ryan J SchutteDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida College of Medicine, Gainesville, FL 32610, USA. rschutte@ufl.edu.
Klara K ErikssonDepartment of Rheumatology, Immunology and Allergology, University Hospital of Bern, 3010 Bern, Switzerland. klara.eriksson@allergy.unibe.ch.
Anette StrhynDepartment of Microbiology and Immunology, University of Copenhagen, 1165 København, Denmark. astryhn@sund.ku.dk.
Austin W BraceyDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida College of Medicine, Gainesville, FL 32610, USA. bracey.a@ufl.edu.
Soren BuusDepartment of Microbiology and Immunology, University of Copenhagen, 1165 København, Denmark. sbuus@sund.ku.dk.
David A OstrovDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida College of Medicine, Gainesville, FL 32610, USA. ostroda@pathology.ufl.edu.
Florida College · USUniversity Hospital of Bern · CHUniversity of Copenhagen · DKHarvard University · USUniversity of Florida · US

Funding

The Structural and Functional Basis of HLA-associated Drug HypersensitivityR01AI103348 · NIAID · UNIVERSITY OF FLORIDA · PI OSTROV, DAVID A · 2013 to 2016
$1.5M
NIAID NIH HHS R01 AI103348
6 · The paper itself

Abstract

Adverse drug reactions are one of the leading causes of morbidity and mortality in health care worldwide. Human leukocyte antigen (HLA) alleles have been strongly associated with drug hypersensitivities, and the causative drugs have been shown to stimulate specific T cells at the sites of autoimmune destruction. The structural elements recognized by drug-specific T cell receptors (TCRs) in vivo are poorly defined. Drug-stimulated T cells express TCRs specific for peptide/HLA complexes, but the characteristics of peptides (sequence, or endogenous or exogenous origin) presented in the context of small molecule drugs are not well studied. Using HLA-B*57:01 mediated hypersensitivity to abacavir as a model system, this study examines structural similarities of HLA presented peptides recognized by drug-specific TCRs. Using the crystal structure of HLA-B*57:01 complexed with abacavir and an immunogenic self peptide, VTTDIQVKV SPT5a 976-984, peptide side chains exhibiting flexibility and solvent exposure were identified as potential drug-specific T cell recognition motifs. Viral sequences with structural motifs similar to the immunogenic self peptide were identified. Abacavir-specific T cell clones were used to determine if virus peptides presented in the context of abacavir stimulate T cell responsiveness. An abacavir-specific T cell clone was stimulated by VTQQAQVRL, corresponding to HSV1/2 230-238, in the context of HLA-B*57:01. These data suggest the T cell polyclonal response to abacavir consists of multiple subsets, including T cells that recognize self peptide/HLA-B*57:01 complexes and crossreact with viral peptide/HLA-B*57:01 complexes due to similarity in TCR contact residues.

Indexed as

AbacavirAmino Acid SequenceCrystallography, X-RayDideoxynucleosidesEpitopesHerpes SimplexHLA-B AntigensHumansPeptidesReceptors, Antigen, T-CellT-LymphocytesTransfectionAbacavirDideoxynucleosidesEpitopesHLA-B57 antigenHLA-B AntigensPeptidesReceptors, Antigen, T-Cellcrystallographydrug hypersensitivityHuman Leukocyte Antigen

Identifiers

PMID28686208
PMCPMC5535955
OpenAlexW2725466029

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.