Evidence map›Paper›PMID 28684735›Full record

ArticleNature communications2017

Measurement of nanoscale three-dimensional diffusion in the interior of living cells by STED-FCS.

Luca Lanzanò, Lorenzo Scipioni, Melody Di Bona, Paolo Bianchini, Ranieri Bizzarri, Francesco Cardarelli, Alberto Diaspro, Giuseppe Vicidomini

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Luca LanzanòNanoscopy, Nanophysics, Istituto Italiano di Tecnologia, via Morego 30, Genoa, 16163, Italy. Luca.Lanzano@iit.it.
Lorenzo ScipioniNanoscopy, Nanophysics, Istituto Italiano di Tecnologia, via Morego 30, Genoa, 16163, Italy.
Melody Di BonaNanoscopy, Nanophysics, Istituto Italiano di Tecnologia, via Morego 30, Genoa, 16163, Italy.
Paolo BianchiniNanoscopy, Nanophysics, Istituto Italiano di Tecnologia, via Morego 30, Genoa, 16163, Italy.ORCID http://orcid.org/0000-0001-6457-751X
Ranieri BizzarriNanoscopy, Nanophysics, Istituto Italiano di Tecnologia, via Morego 30, Genoa, 16163, Italy.
Francesco CardarelliCenter for Nanotechnology Innovation @NEST, Istituto Italiano di Tecnologia, piazza San Silvestro 12, Pisa, 56127, Italy.
Alberto DiasproNanoscopy, Nanophysics, Istituto Italiano di Tecnologia, via Morego 30, Genoa, 16163, Italy. Alberto.Diaspro@iit.it.ORCID http://orcid.org/0000-0002-4916-5928
Giuseppe VicidominiMolecular Microscopy and Spectroscopy, Nanophysics, Istituto Italiano di Tecnologia, via Morego 30, Genoa, 16163, Italy. Giuseppe.Vicidomini@iit.it.ORCID http://orcid.org/0000-0002-3085-730X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The observation of molecular diffusion at different spatial scales, and in particular below the optical diffraction limit (<200 nm), can reveal details of the subcellular topology and its functional organization. Stimulated-emission depletion microscopy (STED) has been previously combined with fluorescence correlation spectroscopy (FCS) to investigate nanoscale diffusion (STED-FCS). However, stimulated-emission depletion fluorescence correlation spectroscopy has only been used successfully to reveal functional organization in two-dimensional space, such as the plasma membrane, while, an efficient implementation for measurements in three-dimensional space, such as the cellular interior, is still lacking. Here we integrate the STED-FCS method with two analytical approaches, the recent separation of photons by lifetime tuning and the fluorescence lifetime correlation spectroscopy, to simultaneously probe diffusion in three dimensions at different sub-diffraction scales. We demonstrate that this method efficiently provides measurement of the diffusion of EGFP at spatial scales tunable from the diffraction size down to ∼80 nm in the cytoplasm of living cells.The measurement of molecular diffusion at sub-diffraction scales has been achieved in 2D space using STED-FCS, but an implementation for 3D diffusion is lacking. Here the authors present an analytical approach to probe diffusion in 3D space using STED-FCS and measure the diffusion of EGFP at different spatial scales.

Indexed as

DiffusionGreen Fluorescent ProteinsMicroscopy, FluorescenceMolecular ImagingSpectrometry, FluorescenceImaging, Three-Dimensionalenhanced green fluorescent proteinGreen Fluorescent Proteins

Identifiers

PMID28684735
PMCPMC5500520

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.