Evidence map›Paper›PMID 28684528›Full record

ArticleCancer research2017

Epigenetically Aberrant Stroma in MDS Propagates Disease via Wnt/β-Catenin Activation.

Tushar D Bhagat, Si Chen, Matthias Bartenstein, A Trevor Barlowe, Dagny Von Ahrens, Gaurav S Choudhary, Patrick Tivnan, Elianna Amin, A Mario Marcondes, Mathijs A Sanders and 28 more

Open access · greenAbstract read
In one paragraph

Article in Cancer research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Pooled it
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  20. Extracellular Vesicles in Myeloid Neoplasms.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 1 institution in 1 country.

Tushar D BhagatAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Si ChenErasmus Medical Center Cancer Institute, Department of Hematology and Erasmus Stem Cell Institute, Rotterdam, the Netherlands.
Matthias BartensteinAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
A Trevor BarloweMemorial Sloan Kettering Cancer Center, New York, New York.
Dagny Von AhrensAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Gaurav S ChoudharyAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Patrick TivnanMemorial Sloan Kettering Cancer Center, New York, New York.
Elianna AminMemorial Sloan Kettering Cancer Center, New York, New York.
A Mario MarcondesClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Mathijs A SandersErasmus Medical Center Cancer Institute, Department of Hematology and Erasmus Stem Cell Institute, Rotterdam, the Netherlands.
Remco M HoogenboezemErasmus Medical Center Cancer Institute, Department of Hematology and Erasmus Stem Cell Institute, Rotterdam, the Netherlands.
Suman KambhampatiUniversity of Kansas, Kansas City, Kansas.
Nandini RamachandraAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Iaonnis MantzarisAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Vineeth SukrithanAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Remi LaurenceAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Robert LopezAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Prafullla BhagatAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Orsi GiriczAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Davendra SohalAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Amittha WickremaUniversity of Chicago, Chicago, Illinois.
Cecilia YeungMemorial Sloan Kettering Cancer Center, New York, New York.
Kira GritsmanAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Peter AplanNational Institutes of Health, Bethesda, Maryland.
Konrad HochedlingerHarvard University, Boston, Massachusetts.
Yiting YuAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Kith PradhanAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Jinghang ZhangAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
John M GreallyAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Siddhartha MukherjeeColumbia University, New York, New York.
Andrea PellagattiBloodwise Molecular Haematology Unit, NDCLS, NIHR Biomedical Research Centre, Oxford University Hospitals, Oxford, United Kingdom.
Jacqueline BoultwoodBloodwise Molecular Haematology Unit, NDCLS, NIHR Biomedical Research Centre, Oxford University Hospitals, Oxford, United Kingdom.
Britta WillAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Ulrich SteidlAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York.
Marc H G P RaaijmakersErasmus Medical Center Cancer Institute, Department of Hematology and Erasmus Stem Cell Institute, Rotterdam, the Netherlands. amit.verma@einstein.yu.edu kharasm@mskcc.org jdeeg@fhcrc.org m.h.g.raaijmakers@erasmusmc.nl.
H Joachim DeegClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington. amit.verma@einstein.yu.edu kharasm@mskcc.org jdeeg@fhcrc.org m.h.g.raaijmakers@erasmusmc.nl.
Michael G KharasMemorial Sloan Kettering Cancer Center, New York, New York. amit.verma@einstein.yu.edu kharasm@mskcc.org jdeeg@fhcrc.org m.h.g.raaijmakers@erasmusmc.nl.
Amit VermaAlbert Einstein College of Medicine, Montefiore Medical Center, Bronx, New York. amit.verma@einstein.yu.edu kharasm@mskcc.org jdeeg@fhcrc.org m.h.g.raaijmakers@erasmusmc.nl.
Fred Hutch Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STREAMSON C CHUA · 2015 to 2026
$27.7M
Collaborative Pathways that Lead to LeukemiaZIABC010982 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI APLAN, PETER · 2009 to 2025
$8.7M
Pre-clinical Studies of Therapy for Myelodysplastic SyndromeZIABC010983 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI APLAN, PETER · 2009 to 2025
$8.2M
Uncovering the role for MSI2 network in hematopoietic stem cellsR01DK101989 · NIDDK · SLOAN-KETTERING INST CAN RESEARCH · PI Michael Kharas, Vijay Ganesh Sankaran · 2014 to 2026
$6.2M
Characterizing the MSI2 network in leukemiaR01CA193842 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI KHARAS, MICHAEL · 2015 to 2025
$4.1M
Molecular and genetic analysis of novel Slicer-dependent miRNA pathways in bloodR01HL135564 · NHLBI · SLOAN-KETTERING INST CAN RESEARCH · PI KHARAS, MICHAEL, LAI, ERIC C · 2017 to 2020
$2.9M
Training of Surgeons for Studies of the Tumor MicroenvironmentT32CA200561 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI MCAULIFFE, JOHN · 2015 to 2024
$2.7M
The role of Dock4 in normal and aberrant erythropoiesisR01HL116336 · NHLBI · UNIVERSITY OF CHICAGO · PI VERMA, AMIT K., WICKREMA, AMITTHA · 2012 to 2015
$1.6M
Therapeutic targeting of MicroRNA-21 in Myelodysplastic syndromesR01DK103961 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI VERMA, AMIT K. · 2014 to 2017
$1.4M
The p110 alpha and delta isoforms of PI3 kinase in hematopoiesis and leukemiaK08CA149208 · NCI · DANA-FARBER CANCER INST · PI GRITSMAN, KIRA · 2010 to 2014
$889k
NCI NIH HHS K08 CA149208NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA193842NCI NIH HHS T32 CA200561NHLBI NIH HHS R01 HL116336NHLBI NIH HHS R01 HL135564NIDDK NIH HHS P30 DK020541NIDDK NIH HHS R01 DK101989NIDDK NIH HHS R01 DK103961
6 · The paper itself

Abstract

The bone marrow microenvironment influences malignant hematopoiesis, but how it promotes leukemogenesis has not been elucidated. In addition, the role of the bone marrow stroma in regulating clinical responses to DNA methyltransferase inhibitors (DNMTi) is also poorly understood. In this study, we conducted a DNA methylome analysis of bone marrow-derived stromal cells from myelodysplastic syndrome (MDS) patients and observed widespread aberrant cytosine hypermethylation occurring preferentially outside CpG islands. Stroma derived from 5-azacytidine-treated patients lacked aberrant methylation and DNMTi treatment of primary MDS stroma enhanced its ability to support erythroid differentiation. An integrative expression analysis revealed that the WNT pathway antagonist FRZB was aberrantly hypermethylated and underexpressed in MDS stroma. This result was confirmed in an independent set of sorted, primary MDS-derived mesenchymal cells. We documented a WNT/β-catenin activation signature in CD34

Indexed as

Epigenesis, GeneticAnimalsApoptosisbeta CateninCell DifferentiationCell ProliferationCpG IslandsDNA MethylationHematopoietic Stem CellsHumansMesenchymal Stem CellsMiceMice, TransgenicMyelodysplastic SyndromesOncogene Proteins, FusionTumor Cells, Culturedbeta CateninNUP98-HOXD13 protein, humanOncogene Proteins, FusionWnt Proteins

Identifiers

PMID28684528
PMCPMC5600853
OpenAlexW2731791503

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.