Evidence map›Paper›PMID 28683099›Full record

ArticlePloS one2017

Dissection of HY5/HYH expression in Arabidopsis reveals a root-autonomous HY5-mediated photomorphogenic pathway.

Yonghong Zhang, Chen Li, Jingxuan Zhang, Jiajing Wang, Jingwei Yang, Yanxia Lv, Nian Yang, Jianping Liu, Xuanbin Wang, Gergo Palfalvi and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Spatiotemporal bifurcation of HY5-mediated blue-light signaling regulates wood development during secondary growth.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Root-specific photoreception directs early root development by HY5-regulated ROS balance.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Yonghong ZhangLaboratory of Medicinal Plant, School of Basic Medicine, Hubei University of Medicine, Shiyan, China.
Chen LiLaboratory of Medicinal Plant, School of Basic Medicine, Hubei University of Medicine, Shiyan, China.
Jingxuan ZhangLaboratory of Medicinal Plant, School of Basic Medicine, Hubei University of Medicine, Shiyan, China.
Jiajing WangKey Laboratory of Ministry of Education for Medicinal Plant Resource and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Developing of Endangered Chinese Crude Drugs in Northwest of China, College of Life Sciences, Shaanxi Normal University, Xi'an, China.
Jingwei YangKey Laboratory of Ministry of Education for Medicinal Plant Resource and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Developing of Endangered Chinese Crude Drugs in Northwest of China, College of Life Sciences, Shaanxi Normal University, Xi'an, China.
Yanxia LvLaboratory of Medicinal Plant, School of Basic Medicine, Hubei University of Medicine, Shiyan, China.
Nian YangLaboratory of Medicinal Plant, School of Basic Medicine, Hubei University of Medicine, Shiyan, China.
Jianping LiuTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, China.
Xuanbin WangLaboratory of Chinese Herbal Pharmacology, Oncology Center, Renmin Hospital, Hubei Key Laboratory of Wudang Local Chinese Medicine Research, Hubei University of Medicine, Shiyan, China.
Gergo PalfalviInstitute of Biology, Faculty of Sciences, University of Pécs, Pécs, Hungary.
Guodong WangKey Laboratory of Ministry of Education for Medicinal Plant Resource and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Developing of Endangered Chinese Crude Drugs in Northwest of China, College of Life Sciences, Shaanxi Normal University, Xi'an, China.
Lanlan ZhengLaboratory of Medicinal Plant, School of Basic Medicine, Hubei University of Medicine, Shiyan, China.
Hubei University of Medicine · CNShaanxi Normal University · CNTobacco Research Institute · CNUniversity of Pecs · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ELONGATED HYPOCOTYL 5 (HY5), a member of the bZIP gene family, is a positive regulator of the light signaling pathway in Arabidopsis thaliana. Whereas the hy5 mutant exhibits an elongated hypocotyl when grown in the light, the hy5 homolog (hyh) mutant does not. Although the functions of HY5 and HYH in light-mediated seedling development have been revealed, the tissue-specific expression patterns of HY5 and HYH and their interconnected regulation are largely unknown. Here, we report that HY5 regulates HYH expression in roots and contributes to root growth under different light conditions. We generated HY5 and HYH transcriptional and translational fusion reporter lines to investigate their expression patterns. HY5 was constitutively expressed in all root tissues, while HYH was predominantly expressed in root xylem cells. Root growth after a dark-to-light transition was perturbed in the hy5 and hy5hyh mutant lines, but not in the hyh mutant line, indicating that HY5 plays a major role in light-regulated root growth. Light-induced HY5/HYH expression occurred autonomously in roots. HYH expression in roots was decreased in the hy5 mutant, suggesting that HY5 regulates HYH expression. Collectively, these results indicate that an organ-specific HY5-mediated pathway controls root photomorphogenic development independently of light signaling in the shoot.

Indexed as

Gene Expression Regulation, PlantLight Signal TransductionArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCarrier ProteinsDNA-Binding ProteinsGenes, ReporterGlucuronidaseGreen Fluorescent ProteinsHypocotylLightMutationNuclear ProteinsOrgan SpecificityPhotosynthesisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCarrier ProteinsDNA-Binding ProteinsGlucuronidaseGreen Fluorescent ProteinsHY5 protein, ArabidopsisHYH protein, ArabidopsisNuclear ProteinsRecombinant Fusion Proteins

Identifiers

PMID28683099
PMCPMC5500333
OpenAlexW2732778111

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.