Evidence map›Paper›PMID 28681555›Full record

ArticleProtein science : a publication of the Protein Society2017

The structure of Plasmodium falciparum 3D7_0606800 reveals a bi-lobed architecture that supports re-annotation as a Venus Flytrap protein.

Michelle L Parker, Raghavendran Ramaswamy, Kyle van Gordon, Cameron J Powell, Jürgen Bosch, Martin J Boulanger

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Michelle L ParkerBiochemistry & Microbiology, University of Victoria, Victoria, British Columbia, V8W 3P6, Canada.
Raghavendran RamaswamyBiochemistry & Microbiology, University of Victoria, Victoria, British Columbia, V8W 3P6, Canada.
Kyle van GordonBiochemistry & Microbiology, University of Victoria, Victoria, British Columbia, V8W 3P6, Canada.
Cameron J PowellBiochemistry & Microbiology, University of Victoria, Victoria, British Columbia, V8W 3P6, Canada.
Jürgen BoschPediatric Pulmonology Division, Department of Pediatrics, Case Western Reserve University School of Medicine, Cleveland, Ohio.
Martin J BoulangerBiochemistry & Microbiology, University of Victoria, Victoria, British Columbia, V8W 3P6, Canada.
University of Victoria · CAUniversity School · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plasmodium falciparum, the causative agent of malaria, employs a diverse array of surface displayed proteins to promote dissemination and establish infection in the human host. Of these, Pf3D7_0606800 is highly immunogenic and has been designated a potential top 10 candidate for inclusion in a multicomponent malarial vaccine. The role of Pf3D7_0606800 in parasite biology, however, is unknown and its characterization has been complicated by a lack of sequence identity with proteins of known structure or function. Towards elucidating Pf3D7_0606800 function, we determined its structure to a resolution of 2.35 Å using selenium single wavelength anomalous dispersion. A bi-lobed architecture displays the core structural hallmarks of Venus Flytrap (VFT) proteins prompting us to re-annotate Pf3D7_0606800 as PfVFT1. Structural analysis further revealed an extended inter-lobe groove that, when interrogated by molecular docking, appears well suited to bind peptide-based ligands. Collectively, our structural characterization of the highly antigenic P. falciparum surface protein PfVFT1 provides intriguing functional insight and establishes a structural template that could prove valuable for malaria vaccine engineering studies.

Indexed as

Crystallography, X-RayDroseraceaeMolecular Docking SimulationPlant ProteinsPlasmodium falciparumProtein ConformationProtozoan ProteinsPlant ProteinsProtozoan Proteinsbi-lobed architectureconformational flexibilityPlasmodium falciparumvenus flytrap domainX-ray crystallography

Identifiers

PMID28681555
PMCPMC5563136
OpenAlexW2725648605

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.