Evidence map›Paper›PMID 28681361›Full record

ArticleJournal of the American Society for Mass Spectrometry2017

Top-Down LESA Mass Spectrometry Protein Analysis of Gram-Positive and Gram-Negative Bacteria.

Klaudia I Kocurek, Leanne Stones, Josephine Bunch, Robin C May, Helen J Cooper

Abstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Native ambient mass spectrometry of intact protein assemblies directly fromChemical communications (Cambridge, England) · 2022
    Article
  6. Article
  7. Liquid Extraction Surface Analysis Mass Spectrometry of ESKAPE Pathogens.Journal of the American Society for Mass Spectrometry · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
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  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Klaudia I KocurekSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Leanne StonesSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Josephine BunchNational Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK.
Robin C MaySchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Helen J CooperSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK. h.j.cooper@bham.ac.uk.

Funding

Engineering and Physical Sciences Research Council EP/L023490/1European Research Council 614562Medical Research Council MR/J008176/1
6 · The paper itself

Abstract

We have previously shown that liquid extraction surface analysis (LESA) mass spectrometry (MS) is a technique suitable for the top-down analysis of proteins directly from intact colonies of the Gram-negative bacterium Escherichia coli K-12. Here we extend the application of LESA MS to Gram-negative Pseudomonas aeruginosa PS1054 and Gram-positive Staphylococcus aureus MSSA476, as well as two strains of E. coli (K-12 and BL21 mCherry) and an unknown species of Staphylococcus. Moreover, we demonstrate the discrimination between three species of Gram-positive Streptococcus (Streptococcus pneumoniae D39, and the viridans group Streptococcus oralis ATCC 35037 and Streptococcus gordonii ATCC35105), a recognized challenge for matrix-assisted laser desorption ionization time-of-flight MS. A range of the proteins detected were selected for top-down LESA MS/MS. Thirty-nine proteins were identified by top-down LESA MS/MS, including 16 proteins that have not previously been observed by any other technique. The potential of LESA MS for classification and characterization of novel species is illustrated by the de novo sequencing of a new protein from the unknown species of Staphylococcus. Graphical Abstract ᅟ.

Indexed as

Bacterial ProteinsEscherichia coliGram-Negative BacteriaGram-Positive BacteriaLiquid-Liquid ExtractionRefrigerationSequence Analysis, ProteinStaphylococcus aureusStreptococcusTandem Mass SpectrometryBacterial ProteinsAmbient mass spectrometryGram-negativeGram-positiveLESATop-down protein analysis

Identifiers

PMID28681361
PMCPMC5594050

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.