Evidence map›Paper›PMID 28681112›Full record

ArticleExtremophiles : life under extreme conditions2017

Characterization of a cold-active bacterium isolated from the South Pole "Ice Tunnel".

Michael T Madigan, Megan L Kempher, Kelly S Bender, Paul Sullivan, W Matthew Sattley, Alice C Dohnalkova, Samantha B Joye

Abstract read
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Article in Extremophiles : life under extreme conditions, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Michael T MadiganDepartment of Microbiology, Southern Illinois University, Carbondale, IL, 62901, USA. madigan@siu.edu.
Megan L KempherDepartment of Microbiology, Southern Illinois University, Carbondale, IL, 62901, USA.
Kelly S BenderDepartment of Microbiology, Southern Illinois University, Carbondale, IL, 62901, USA.
Paul SullivanUnited States Antarctic Program, Amundsen-Scott Station, Antarctica.
W Matthew SattleyDivision of Natural Sciences, Indiana Wesleyan University, Marion, IN, 46953, USA.
Alice C DohnalkovaPacific Northwest National Laboratory, Richland, WA, 99352, USA.
Samantha B JoyeDepartment of Marine Sciences, University of Georgia, Athens, GA, 30602, USA.
Southern Illinois University Carbondale · USIndiana Wesleyan University · USPacific Northwest National Laboratory · USUniversity of Georgia · USUniversity of Oklahoma · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extremely cold microbial habitats on Earth (those below -30 °C) are rare and have not been surveyed for microbes as extensively as environments in the 0 to -20 °C range. Using cryoprotected growth media incubated at -5 °C, we enriched a cold-active Pseudomonas species from -50 °C ice collected from a utility tunnel for wastewater pipes under Amundsen-Scott South Pole Station, Antarctica. The isolate, strain UC-1, is related to other cold-active Pseudomonas species, most notably P. psychrophila, and grew at -5 °C to +34-37 °C; growth of UC-1 at +3 °C was significantly faster than at +34 °C. Strain UC-1 synthesized a surface exopolymer and high levels of unsaturated fatty acids under cold growth conditions. A 16S rRNA gene diversity screen of the ice sample that yielded strain UC-1 revealed over 1200 operational taxonomic units (OTUs) distributed across eight major classes of Bacteria. Many of the OTUs were Clostridia and Bacteriodia and some of these were probably of wastewater origin. However, a significant fraction of the OTUs were Proteobacteria and Actinobacteria of likely environmental origin. Our results shed light on the lower temperature limits to life and the possible existence of functional microbial communities in ultra-cold environments.

Indexed as

Extreme ColdMicrobiotaActinobacteriaAntarctic RegionsClostridiumFatty Acids, UnsaturatedPolysaccharides, BacterialProteobacteriaPseudomonasRNA, Ribosomal, 16SWastewaterFatty Acids, UnsaturatedPolysaccharides, BacterialRNA, Ribosomal, 16SWastewaterAmundsen–Scott South Pole StationAntarctic microbiologyPseudomonas psychrophila

Identifiers

PMID28681112
OpenAlexW2724910010

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.