Evidence map›Paper›PMID 28680045›Full record

ArticleScientific reports2017

Transcriptomic Profiling Reveals Differentially Expressed Genes Associated with Pine Wood Nematode Resistance in Masson Pine (Pinus massoniana Lamb.).

Qinghua Liu, Yongcheng Wei, Liuyi Xu, Yanping Hao, Xuelian Chen, Zhichun Zhou

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 87 citations in OpenAlex.

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  12. International journal of molecular sciences · 2024
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  15. Resistant and SusceptibleInternational journal of molecular sciences · 2023
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  16. Comprehensive Analysis and Functional Verification of theInternational journal of molecular sciences · 2023
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  17. Article
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  19. Review
  20. Identification and Defensive Characterization ofInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Qinghua LiuResearch Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, People's Republic of China.
Yongcheng WeiResearch Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, People's Republic of China.
Liuyi XuAnhui Academy of Forestry, Hefei, Anhui, People's Republic of China.
Yanping HaoAnhui Academy of Forestry, Hefei, Anhui, People's Republic of China.
Xuelian ChenAnhui Academy of Forestry, Hefei, Anhui, People's Republic of China.
Zhichun ZhouResearch Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, People's Republic of China. zczhou_risf@163.com.
Chinese Academy of Forestry · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pine wilt disease caused by pine wood nematode (Bursaphelenchus xylophilus, PWN) is a severe forest disease of the genus Pinus. Masson pine as an important timber and oleoresin resource in South China, is the major species infected by pine wilt disease. However, the underlying mechanism of pine resistance is still unclear. Here, we performed a transcriptomics analysis to identify differentially expressed genes associated with resistance to PWN infection. By comparing the expression profiles of resistant and susceptible trees inoculated with PWN at 1, 15, or 30 days post-inoculation (dpi), 260, 371 and 152 differentially expressed genes (DEGs) in resistant trees and 756, 2179 and 398 DEGs in susceptible trees were obtained. Gene Ontology enrichment analysis of DEGs revealed that the most significant biological processes were "syncytium formation" in the resistant phenotype and "response to stress" and "terpenoid biosynthesis" in the susceptible phenotype at 1 and 15 dpi, respectively. Furthermore, some key DEGs with potential regulatory roles to PWN infection, including expansins, pinene synthases and reactive oxidation species (ROS)-related genes were evaluated in detail. Finally, we propose that the biosynthesis of oleoresin and capability of ROS scavenging are pivotal to the high resistance of PWN.

Indexed as

Disease ResistanceAnimalsChinaGene Expression ProfilingGene Expression Regulation, PlantPinusPlant DiseasesPlant ProteinsReverse Transcriptase Polymerase Chain ReactionSequence Analysis, RNATylenchidaPlant Proteins

Identifiers

PMID28680045
PMCPMC5498564
OpenAlexW2733191553

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.