Evidence map›Paper›PMID 28679545›Full record

ArticleGenetics2017

Decomposing the Site Frequency Spectrum: The Impact of Tree Topology on Neutrality Tests.

Luca Ferretti, Alice Ledda, Thomas Wiehe, Guillaume Achaz, Sebastian E Ramos-Onsins

Abstract read
In one paragraph

Article in Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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  9. Distance metrics for ranked evolutionary trees.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Luca FerrettiThe Pirbright Institute, Woking, GU24 0NF, United Kingdom luca.ferretti@gmail.com.
Alice LeddaDepartment of Infectious Disease Epidemiology, Imperial College, London, W2 1PG, United Kingdom.
Thomas WieheInstitute of Genetics, University of Cologne, D-50674, Germany.
Guillaume AchazInstitut de Systématique, Evolution, Biodiversité, Unité Mixte de Recherche 7205, Paris CEDEX 05, France.
Sebastian E Ramos-OnsinsCentre for Research in Agricultural Genomics (CRAG), Bellaterra, 08290 Barcelona, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigate the dependence of the site frequency spectrum on the topological structure of genealogical trees. We show that basic population genetic statistics, for instance, estimators of

Indexed as

Models, GeneticMutation RatePhylogenySelection, Geneticcoalescent theoryneutrality testssite frequency spectrumtree balancetree shape

Identifiers

PMID28679545
PMCPMC5586374

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.