Evidence map›Paper›PMID 28679543›Full record

ArticleGenetics2017

Tracing Genetic Exchange and Biogeography of

Johanna Rhodes, Christopher A Desjardins, Sean M Sykes, Mathew A Beale, Mathieu Vanhove, Sharadha Sakthikumar, Yuan Chen, Sharvari Gujja, Sakina Saif, Anuradha Chowdhary and 16 more

Abstract read
In one paragraph

Article in Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Emergence of terbinafine-resistantJournal of clinical microbiology · 2025
    Article
  9. Current Approaches in Genome Assembly of Human Fungal Pathogens.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Comparative genomics ofbioRxiv : the preprint server for biology · 2024
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Impact of pathogen genetics on clinical phenotypes in a population ofbioRxiv : the preprint server for biology · 2023
    Article
  19. A Landscape of the Genomic Structure ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  20. What's New inJournal of fungi (Basel, Switzerland) · 2022
    Review

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Johanna RhodesDepartment of Infectious Disease Epidemiology, Imperial College London, W2 1PG, United Kingdom.ORCID 0000-0002-1338-7860
Christopher A DesjardinsInfectious Disease and Microbiome Program, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts 02142.ORCID 0000-0002-3160-4734
Sean M SykesInfectious Disease and Microbiome Program, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts 02142.
Mathew A BealeDepartment of Infectious Disease Epidemiology, Imperial College London, W2 1PG, United Kingdom.ORCID 0000-0002-4740-3187
Mathieu VanhoveDepartment of Infectious Disease Epidemiology, Imperial College London, W2 1PG, United Kingdom.
Sharadha SakthikumarInfectious Disease and Microbiome Program, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts 02142.
Yuan ChenDivision of Infectious Diseases, Department of Medicine, Duke University Medical Center, Durham, North Carolina 27710.
Sharvari GujjaInfectious Disease and Microbiome Program, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts 02142.
Sakina SaifInfectious Disease and Microbiome Program, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts 02142.
Anuradha ChowdharyDepartment of Medical Mycology, Vallabhbhai Patel Chest Institute, University of Delhi, 110007, India.ORCID 0000-0002-2028-7462
Daniel John LawsonIntegrative Epidemiology Unit, School of Social and Community Medicine, University of Bristol, BS8 1TH, United Kingdom.ORCID 0000-0002-5311-6213
Vinicius PonzioDivision of Infectious Diseases, Federal University of São Paulo, 04039-032, Brazil.
Arnaldo Lopes ColomboDivision of Infectious Diseases, Federal University of São Paulo, 04039-032, Brazil.
Wieland MeyerMolecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Sydney Medical School-Westmead Hospital, Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Westmead Institute for Medical Research, 2145, Australia.ORCID 0000-0001-9933-8340
David M EngelthalerTGen North, Translational Genomics Research Institute, Flagstaff, Arizona 86005.
Ferry HagenDepartment of Medical Microbiology and Infectious Diseases, Canisius-Wilhelmina Hospital, 6532SZ Nijmegen, The Netherlands.ORCID 0000-0002-5622-1916
Maria Teresa Illnait-ZaragoziDepartamento Bacteriología-Micologia, Centro de Investigación, Diagnóstico y Referencia, Instituto de Medicina Tropical Pedro Kourí, La Habana, 601, Cuba.
Alexandre AlanioLaboratoire de Parasitologie-Mycologie, Assistance Publique-Hôpitaux de Paris, Groupe Hospitalier Saint-Louis-Lariboisière-Fernand-Widal Paris, 75010, France; Université Paris Diderot, Sorbonne Paris Cité, 75010, Paris, France; Unité de Mycologie Moléculaire, Institut Pasteur, Centre National de la Recherche Scientifique, Centre National de Référence Mycoses Invasives et Antifongiques, URA3012, 75015, Paris, France.ORCID 0000-0001-9726-3082
Jo-Marie VreulinkDepartment of Microbiology, Stellenbosch University, 7600, South Africa.ORCID 0000-0001-5446-1396
Joseph HeitmanDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.ORCID 0000-0001-6369-5995
John R PerfectDivision of Infectious Diseases, Department of Medicine, Duke University Medical Center, Durham, North Carolina 27710.ORCID 0000-0003-0019-8638
Anastasia P LitvintsevaDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710.
Tihana BicanicInstitute of Infection and Immunity, St. George's University London, WC1E 6BT, United Kingdom.
Thomas S HarrisonInstitute of Infection and Immunity, St. George's University London, WC1E 6BT, United Kingdom.
Matthew C FisherDepartment of Infectious Disease Epidemiology, Imperial College London, W2 1PG, United Kingdom matthew.fisher@imperial.ac.uk cuomo@broadinstitute.org.ORCID 0000-0002-1862-6402
Christina A CuomoInfectious Disease and Microbiome Program, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts 02142 matthew.fisher@imperial.ac.uk cuomo@broadinstitute.org.ORCID 0000-0002-5778-960X

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI NEAFSEY, DANIEL E · 2014 to 2024
$66.5M
Structure, function, and evolution of the Cryptococcus MAT locusR01AI050113 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2002 to 2024
$8.5M
ROLE OF CALCINEURIN IN C. NEOFORMANS MATING AND FRUITINGR01AI039115 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 1997 to 2025
$6.7M
Genetics of Cryptococcus sexual reproductionR37AI039115 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2011 to 2020
$4.9M
Pathobiology of C. neoformans in the Central Nervous SystemR01AI073896 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2008 to 2018
$4.4M
Evolution of Cryptococcus neoformans Strains from Patients with HIV/AIDSR01AI093257 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2011 to 2022
$3.8M
Medical Research Council MR/K000373/1NHGRI NIH HHS U54 HG003067NIAID NIH HHS R01 AI039115NIAID NIH HHS R01 AI050113NIAID NIH HHS R01 AI073896NIAID NIH HHS R01 AI093257NIAID NIH HHS R37 AI039115NIAID NIH HHS U19 AI110818Wellcome TrustWellcome Trust WT104125MA
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Evolution, MolecularGenome, FungalRecombination, GeneticAneuploidyChromosomes, FungalCryptococcus neoformansLoss of HeterozygosityPhylogenyPhylogeographyCryptococcusgenome sequencehybridizationphylogeographyrecombinationselection

Identifiers

PMID28679543
PMCPMC5586382

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.