Evidence map›Paper›PMID 28678401›Full record

ArticleCancer2017

Assessing the spectrum of germline variation in Fanconi anemia genes among patients with head and neck carcinoma before age 50.

Settara C Chandrasekharappa, Steven B Chinn, Frank X Donovan, Naweed I Chowdhury, Aparna Kamat, Adebowale A Adeyemo, James W Thomas, Meghana Vemulapalli, Caroline S Hussey, Holly H Reid and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. MutatedCells · 2022
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Focal Point of Fanconi Anemia Signaling.International journal of molecular sciences · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. A pathogenic germlineClinical case reports · 2021
    Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Settara C ChandrasekharappaCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Steven B ChinnDepartment of Otolaryngology-Head and Neck Surgery, The University of Michigan, Ann Arbor, Michigan.
Frank X DonovanCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Naweed I ChowdhuryDepartment of Otolaryngology-Head and Neck Surgery, University of Kansas Medical Center, Kansas City, Kansas.
Aparna KamatCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Adebowale A AdeyemoCenter for Research on Genomics and Global Health, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
James W ThomasIntramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Meghana VemulapalliIntramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Caroline S HusseyThe University of Texas Health Science Center School of Medicine, Houston, Texas.
Holly H ReidDepartment of Dermatology, The University of Texas Health Science Center School of Medicine, Houston, Texas.
James C MullikinIntramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Qingyi WeiDepartment of Medicine, Duke University School of Medicine, Durham, North Carolina.
Erich M SturgisDepartment of Head and Neck Surgery, The University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID http://orcid.org/0000-0002-1069-4822
National Institutes of Health · USThe University of Texas Health Science Center · USDuke University · USThe University of Texas MD Anderson Cancer Center · USUniversity of Kansas Medical Center · USUniversity of Michigan · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
NHGRI/DIR Genomics CoreZICHG200346 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI CHANDRASEKHARAPPA, SETTARA · 2010 to 2025
$14.5M
POSITIONAL CLONING OF THE MEN1 GENEZIAHG000029 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI CHANDRASEKHARAPPA, SETTARA · 2009 to 2025
$13.3M
NCI NIH HHS P30 CA016672
6 · The paper itself

Abstract

backgroundPatients with Fanconi anemia (FA) have an increased risk for head and neck squamous cell carcinoma (HNSCC). The authors sought to determine the prevalence of undiagnosed FA and FA carriers among patients with HNSCC as well as an age cutoff for FA genetic screening.

methodsGermline DNA samples from 417 patients with HNSCC aged <50 years were screened for sequence variants by targeted next-generation sequencing of the entire length of 16 FA genes.

resultsThe sequence revealed 194 FA gene variants in 185 patients (44%). The variant spectrum was comprised of 183 nonsynonymous point mutations, 9 indels, 1 large deletion, and 1 synonymous variant that was predicted to effect splicing. One hundred eight patients (26%) had at least 1 rare variant that was predicted to be damaging, and 57 (14%) had at least 1 rare variant that was predicted to be damaging and had been previously reported. Fifteen patients carried 2 rare variants or an X-linked variant in an FA gene. Overall, an age cutoff for FA screening was not identified among young patients with HNSCC, because there were no significant differences in mutation rates when patients were stratified by age, tumor site, ethnicity, smoking status, or human papillomavirus status. However, an increased burden, or mutation load, of FA gene variants was observed in carriers of the genes FA complementation group D2 (FANCD2), FANCE, and FANCL in the HNSCC patient cohort relative to the 1000 Genomes population.

conclusionsFA germline functional variants offer a novel area of study in HNSCC tumorigenesis. FANCE and FANCL, which are components of the core complex, are known to be responsible for the recruitment and ubiquitination, respectively, of FANCD2, a critical step in the FA DNA repair pathway. In the current cohort, the increased mutation load of FANCD2, FANCE, and FANCL variants among younger patients with HNSCC indicates the importance of the FA pathway in HNSCC. Cancer 2017;123:3943-54. © 2017 American Cancer Society.

Indexed as

AdultAge of OnsetBRCA2 ProteinCarcinoma, Squamous CellDNA Mutational AnalysisFanconi AnemiaFanconi Anemia Complementation Group D2 ProteinFanconi Anemia Complementation Group E ProteinFanconi Anemia Complementation Group L ProteinFanconi Anemia Complementation Group ProteinsFemaleGerm-Line MutationHead and Neck NeoplasmsHeterozygoteHigh-Throughput Nucleotide SequencingHumansBRCA2 ProteinBRCA2 protein, humanFANCD2 protein, humanFANCE protein, humanFANCI protein, humanFANCL protein, humanFanconi Anemia Complementation Group D2 ProteinFanconi Anemia Complementation Group E ProteinFanconi Anemia Complementation Group L ProteinFanconi Anemia Complementation Group ProteinsRecombinasesSLX4 protein, humanFanconi anemiagermline variationshead and neck cancersrecessive inherited disorderssquamous cell carcinoma

Identifiers

PMID28678401
PMCPMC5853120
OpenAlexW2727693429

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.