Evidence map›Paper›PMID 28676715›Full record

ArticleThe Journal of antibiotics2017

Allantopyrone A interferes with multiple components of the TNF receptor 1 complex and blocks RIP1 modifications in the TNF-α-induced signaling pathway.

Hue Tu Quach, Riho Tanigaki, Junpei Yokoigawa, Yuriko Yamada, Masamitsu Niwa, Seiya Hirano, Yoshihito Shiono, Ken-Ichi Kimura, Takao Kataoka

Erratum issuedOpen access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in The Journal of antibiotics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Hue Tu QuachDepartment of Applied Biology, Kyoto Institute of Technology, Kyoto, Japan.
Riho TanigakiDepartment of Applied Biology, Kyoto Institute of Technology, Kyoto, Japan.
Junpei YokoigawaDepartment of Applied Biology, Kyoto Institute of Technology, Kyoto, Japan.
Yuriko YamadaDepartment of Applied Biology, Kyoto Institute of Technology, Kyoto, Japan.
Masamitsu NiwaCenter for Biological Resources and Informatics, Tokyo Institute of Technology, Kanagawa, Japan.
Seiya HiranoDepartment of Applied Biology, Kyoto Institute of Technology, Kyoto, Japan.
Yoshihito ShionoDepartment of Food, Life, and Environmental Science, Faculty of Agriculture, Yamagata University, Yamagata, Japan.
Ken-Ichi KimuraThe United Graduate School of Agricultural Sciences, Iwate University, Iwate, Japan.
Takao KataokaDepartment of Applied Biology, Kyoto Institute of Technology, Kyoto, Japan.
Kyoto Institute of Technology · JPTokyo Institute of Technology · JPIwate University · JPYamagata University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Allantopyrone A is a fungal metabolite that uniquely possesses two α,β-unsaturated carbonyl moieties. We recently reported that allantopyrone A inhibited the nuclear factor-κB (NF-κB) signaling pathway induced by tumor necrosis factor (TNF)-α in human lung carcinoma A549 cells. In the present study, the mechanism by which allantopyrone A inhibits the TNF-α-induced signaling pathway was investigated in more detail. Allantopyrone A blocked extensive modifications to receptor-interacting protein 1 (RIP1) in the TNF receptor 1 (TNF-R1) complex. Allantopyrone A augmented the high-MW bands of TNF-R1, TNF receptor-associated factor 2, RIP1, the NF-κB subunit RelA and inhibitor of NF-κB kinase β in A549 cells, suggesting that it binds to and promotes the crosslinking of these proteins. The extracellular cysteine-rich domains of TNF-R1 were crosslinked by allantopyrone A more preferentially than its intracellular portion. The present results demonstrate that allantopyrone A interferes with multiple components of the TNF-R1 complex and blocks RIP1 modifications in the TNF-α-induced NF-κB signaling pathway.

Indexed as

A549 CellsAntibiotics, AntineoplasticCysteineGenes, ReporterHEK293 CellsHSP90 Heat-Shock ProteinsHumansMolecular WeightNF-KappaB Inhibitor alphaPeptide FragmentsProtein Interaction Domains and MotifsProtein MultimerizationProtein Processing, Post-TranslationalPyronesReceptor-Interacting Protein Serine-Threonine KinasesReceptors, Tumor Necrosis Factor, Type Iallantopyrone AAntibiotics, AntineoplasticCysteineHSP90 Heat-Shock ProteinsNF-KappaB Inhibitor alphaNFKBIA protein, humanPeptide FragmentsPSMD2 protein, humanPyronesReceptor-Interacting Protein Serine-Threonine KinasesReceptors, Tumor Necrosis Factor, Type IRecombinant Fusion ProteinsRELA protein, humanRIPK1 protein, humanTNF protein, humanTNF Receptor-Associated Factor 2TNFRSF1A protein, humanTranscription Factor RelATRAP1 protein, humanTumor Necrosis Factor-alpha

Identifiers

PMID28676715
OpenAlexW2731243725

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.