Evidence map›Paper›PMID 28676676›Full record

ArticleScientific reports2017

Identifying pathways modulating sleep duration: from genomics to transcriptomics.

Karla V Allebrandt, Maris Teder-Laving, Paola Cusumano, Goar Frishman, Rosa Levandovski, Andreas Ruepp, Maria P L Hidalgo, Rodolfo Costa, Andres Metspalu, Till Roenneberg and 1 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06246214 (Innovations in Biological Rhythms in the Context of Mental Health), which is not on this map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06246214 narecruitingnot on this mapstarted 2024, after this paper: background citation

Innovations in Biological Rhythms in the Context of Mental Health: Effectiveness of New Technologies and Exposure to Different Lighting Patterns in Women During the Postpartum Period

TypeinterventionalSponsorHospital de Clinicas de Porto AlegreRan2024 to 2027Enrolled150ConditionsDepression, Postpartum, Anxiety StateArmsBlue Light Therapy, ControlLT
3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. High-Frequency Neuronal Bursting is Essential for Circadian and Sleep Behaviors inThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  3. Therapeutic Effect of Berberine on Insomnia Rats by ErbB Signaling Pathway.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
  4. The molecular genetics of human sleep.The European journal of neuroscience · 2020
    Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 5 countries.

Karla V AllebrandtInstitute of Medical Psychology, Ludwig-Maximilians-University, Munich, Germany. karlaviviani.allebrandt@gmail.com.
Maris Teder-LavingEstonian Genome Center and Institute of Molecular and Cell Biology of University of Tartu, Estonian Biocentre, Tartu, Estonia.
Paola CusumanoDepartment of Biology, University of Padova, Padova, Italy.
Goar FrishmanInstitute for Bioinformatics and Systems Biology (IBIS); Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Neuherberg, Germany.
Rosa LevandovskiDepartamento de Psiquiatria e Medicina Legal, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil.
Andreas RueppInstitute for Bioinformatics and Systems Biology (IBIS); Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Neuherberg, Germany.
Maria P L HidalgoDepartamento de Psiquiatria e Medicina Legal, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil.
Rodolfo CostaDepartment of Biology, University of Padova, Padova, Italy.
Andres MetspaluEstonian Genome Center and Institute of Molecular and Cell Biology of University of Tartu, Estonian Biocentre, Tartu, Estonia.
Till RoennebergInstitute of Medical Psychology, Ludwig-Maximilians-University, Munich, Germany.
Cristiano De PittàDepartment of Biology, University of Padova, Padova, Italy.
University of Padua · ITLudwig-Maximilians-Universität München · DEUniversidade Federal do Rio Grande do Sul · BREstonian Biocentre · EEInstitute of Bioinformatics · INInstitute of Bioinformatics and Systems Biology · DEUniversity of Tartu · EE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recognizing that insights into the modulation of sleep duration can emerge by exploring the functional relationships among genes, we used this strategy to explore the genome-wide association results for this trait. We detected two major signalling pathways (ion channels and the ERBB signalling family of tyrosine kinases) that could be replicated across independent GWA studies meta-analyses. To investigate the significance of these pathways for sleep modulation, we performed transcriptome analyses of short sleeping flies' heads (knockdown for the ABCC9 gene homolog; dSur). We found significant alterations in gene-expression in the short sleeping knockdowns versus controls flies, which correspond to pathways associated with sleep duration in our human studies. Most notably, the expression of Rho and EGFR (members of the ERBB signalling pathway) genes was down- and up-regulated, respectively, consistently with the established role of these genes for sleep consolidation in Drosophila. Using a disease multifactorial interaction network, we showed that many of the genes of the pathways indicated to be relevant for sleep duration had functional evidence of their involvement with sleep regulation, circadian rhythms, insulin secretion, gluconeogenesis and lipogenesis.

Indexed as

Gene Expression RegulationSignal TransductionAnimalsComputational BiologyDrosophilaErbB ReceptorsGene Expression ProfilingGene Regulatory NetworksGenome-Wide Association StudyGenomicsHumansMeta-Analysis as TopicPhenotypePolymorphism, Single NucleotideSleepTranscriptomeErbB Receptors

Identifiers

PMID28676676
PMCPMC5496883
OpenAlexW2726697100

What OpenQuestion holds

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.