Evidence map›Paper›PMID 28675490›Full record

ArticleThe Journal of comparative neurology2017

The significance of negative correlations in brain connectivity.

Liang Zhan, Lisanne M Jenkins, Ouri E Wolfson, Johnson Jonaris GadElkarim, Kevin Nocito, Paul M Thompson, Olusola A Ajilore, Moo K Chung, Alex D Leow

Abstract read
In one paragraph

Article in The Journal of comparative neurology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Review
  2. Article
  3. Deriving functional network topology frombioRxiv : the preprint server for biology · 2026
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  14. Contrastive Brain Network Learning via Hierarchical Signed Graph Pooling Model.IEEE transactions on neural networks and learning systems · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Liang ZhanComputer Engineering Program, University of Wisconsin-Stout, Menomonie, Wisconsin.ORCID http://orcid.org/0000-0002-7920-4828
Lisanne M JenkinsDepartment of Psychiatry, University of Illinois, Chicago, Illinois.
Ouri E WolfsonDepartment of Computer Science, University of Illinois, Chicago, Illinois.
Johnson Jonaris GadElkarimDepartment of Bioengineering, University of Illinois, Chicago, Illinois.
Kevin NocitoDepartment of Bioengineering, University of Illinois, Chicago, Illinois.
Paul M ThompsonImaging Genetics Center, and Institute for Neuroimaging and Informatics, Keck School of Medicine of USC, Marina del Rey, California.
Olusola A AjiloreDepartment of Psychiatry, University of Illinois, Chicago, Illinois.
Moo K ChungDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin.ORCID http://orcid.org/0000-0003-2852-9670
Alex D LeowDepartment of Psychiatry, University of Illinois, Chicago, Illinois.

Funding

The Epilepsy Bioinformatics Study for Antiepileptogenic Therapy (EpiBioS4Rx) Public Engagement CoreU54NS100064 · NINDS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI VESPA, PAUL M · 2017 to 2021
$21.7M
TR&D3: Intrinsic Surface MappingP41EB015922 · NIBIB · UNIVERSITY OF SOUTHERN CALIFORNIA · PI VAN HORN, JOHN DARRELL · 2012 to 2022
$14.1M
Training U54EB020403 · NIBIB · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMPSON, PAUL M · 2014 to 2018
$10.1M
BRAIN Initiative: Theories, Models and Methods for Analysis of Complex Data from the BrainR01EB022856 · NIBIB · UNIVERSITY OF WISCONSIN-MADISON · PI CHUNG, MOO K · 2016 to 2018
$1.1M
Highly-sensitive imaging markers for early detection of Alzheimer's Disease using multi-view connectomicsR21AG056782 · NIA · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LEOW, ALEX, THOMPSON, PAUL M · 2017 to 2018
$425k
NIA NIH HHS R21 AG056782NIBIB NIH HHS P41 EB015922NIBIB NIH HHS R01 EB022856NIBIB NIH HHS U54 EB020403NINDS NIH HHS U54 NS100064
6 · The paper itself

Abstract

Understanding the modularity of functional magnetic resonance imaging (fMRI)-derived brain networks or "connectomes" can inform the study of brain function organization. However, fMRI connectomes additionally involve negative edges, which may not be optimally accounted for by existing approaches to modularity that variably threshold, binarize, or arbitrarily weight these connections. Consequently, many existing Q maximization-based modularity algorithms yield variable modular structures. Here, we present an alternative complementary approach that exploits how frequent the blood-oxygen-level-dependent (BOLD) signal correlation between two nodes is negative. We validated this novel probability-based modularity approach on two independent publicly-available resting-state connectome data sets (the Human Connectome Project [HCP] and the 1,000 functional connectomes) and demonstrated that negative correlations alone are sufficient in understanding resting-state modularity. In fact, this approach (a) permits a dual formulation, leading to equivalent solutions regardless of whether one considers positive or negative edges; (b) is theoretically linked to the Ising model defined on the connectome, thus yielding modularity result that maximizes data likelihood. Additionally, we were able to detect novel and consistent sex differences in modularity in both data sets. As data sets like HCP become widely available for analysis by the neuroscience community at large, alternative and perhaps more advantageous computational tools to understand the neurobiological information of negative edges in fMRI connectomes are increasingly important.

Indexed as

Magnetic Resonance ImagingBrainCerebrovascular CirculationComputer SimulationConnectomeFemaleHumansMaleModels, NeurologicalNeural PathwaysOxygenRestSex CharacteristicsOxygenF1000functional connectomeHuman Connectome Projectmodularitynegative correlationsresting stateRRID: SCR_005361RRID: SCR_006942

Identifiers

PMID28675490
PMCPMC6625529

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.