Evidence map›Paper›PMID 28674753›Full record

ArticlePlanta2017

Regulation of FATTY ACID ELONGATION1 expression and production in Brassica oleracea and Capsella rubella.

Dinghong Li, Zhao Lei, Jiayu Xue, Guangcan Zhou, Yueyu Hang, Xiaoqin Sun

Abstract read
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In one paragraph

Article in Planta, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Dinghong LiInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1 Qianhu Houcun, Nanjing, 210014, Jiangsu, China.
Zhao LeiInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1 Qianhu Houcun, Nanjing, 210014, Jiangsu, China.
Jiayu XueInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1 Qianhu Houcun, Nanjing, 210014, Jiangsu, China.
Guangcan ZhouInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1 Qianhu Houcun, Nanjing, 210014, Jiangsu, China.
Yueyu HangInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1 Qianhu Houcun, Nanjing, 210014, Jiangsu, China.
Xiaoqin SunInstitute of Botany, Jiangsu Province and Chinese Academy of Sciences, No. 1 Qianhu Houcun, Nanjing, 210014, Jiangsu, China. xiaoqinsun@cnbg.net.ORCID http://orcid.org/0000-0001-7503-879X
Chinese Academy of Sciences · CN

Funding

Jiangsu Key Laboratory for the Research and Uti1ization of Plant Resources JSPKLB201510Jiangsu Province Key Laboratory for Plant Ex Situ Conservation QIAN201202National Natural Science Foundation of China 31470448Project for Ability Improvement of Provincial Public Institutes BM2015019
6 · The paper itself

Abstract

MAIN

conclusionThe contribution of variations in coding regions or promoters to the changes in FAE1 expression levels have be quantified and compared in parallel by specifically designed swapping constructs. FATTY ACID ELONGATION1 (FAE1) is a key gene in control of erucic acid synthesis in plant seeds. The expression of FAE1 genes in Brassica oleracea and Capsella rubella, representatives of high and low erucic acid species, respectively, was characterized to provide insight into the regulation of very long-chain fatty-acid biosynthesis in seeds. Virtually, no methylation was detected either in B. oleracea or in C. rubella, suggesting that modification of promoter methylation might not be a predominant mechanism. Swapping constructs were specifically designed to quantify and compare the contribution of variations in coding regions or promoters to the changes in FAE1 expression levels in parallel. A significantly higher fold change in erucic acid content was observed when swapping coding regions rather than when swapping promoters, indicating that the coding region is a major determinant of the catalytic power of β-ketoacyl-CoA synthase proteins. Common motifs have been proposed as essential for the preservation of basic gene expression patterns, such as seed-specific expression. However, the occurrence of variation in common cis-elements or the presence of species-specific cis-elements might be plausible mechanisms for changes in the expression levels in different organisms. In addition, conflicting observations in previous reports associated with FAE1 expression are discussed, and we suggest that caution should be taken when selecting a plant transformation vector and in interpreting the results obtained from vectors carrying the CaMV 35S promoter.

Indexed as

Gene Expression Regulation, PlantAcetyltransferasesAmino Acid SequenceArabidopsisBrassicaCapsellaDNA MethylationErucic AcidsEvolution, MolecularFatty Acid ElongasesGenes, ReporterNucleotide MotifsOpen Reading FramesPlants, Genetically ModifiedPromoter Regions, GeneticSequence AlignmentAcetyltransferaseserucic acidErucic AcidsFatty Acid ElongasesErucic acidExpression regulationFATTY ACID ELONGATION1Swapping

Identifiers

PMID28674753
OpenAlexW2730513093

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.