Evidence map›Paper›PMID 28673821›Full record

ArticleExperimental cell research2017

The effects of chemical fixation on the cellular nanostructure.

Yue Li, Luay M Almassalha, John E Chandler, Xiang Zhou, Yolanda E Stypula-Cyrus, Karl A Hujsak, Eric W Roth, Reiner Bleher, Hariharan Subramanian, Igal Szleifer and 2 more

Abstract read
In one paragraph

Article in Experimental cell research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
  2. Review
  3. Single Particle Tracking Photo-Activated Localization Microscopy.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  4. Article
  5. Cryo-SEM in haematological research.Journal of microscopy · 2025
    Article
  6. Article
  7. Article
  8. Chromatin Organization Governs Transcriptional Response and Plasticity of Cancer Stem Cells.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Tracing the Chromatin: From 3C to Live-Cell Imaging.Chemical & biomedical imaging · 2024
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Direct observation of the effects of chemical fixation in MNT-1 cells: A SE-ADM and Raman study.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yue LiApplied Physics Program, Northwestern University, Evanston, IL, USA. Electronic address: yueli2014@u.northwestern.edu.
Luay M AlmassalhaDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
John E ChandlerDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Xiang ZhouDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Yolanda E Stypula-CyrusDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Karl A HujsakDepartment of Chemistry, Northwestern University, Evanston, IL 60208, USA.
Eric W RothDepartment of Chemistry, Northwestern University, Evanston, IL 60208, USA.
Reiner BleherDepartment of Chemistry, Northwestern University, Evanston, IL 60208, USA.
Hariharan SubramanianDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Igal SzleiferDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA; Department of Chemistry, Northwestern University, Evanston, IL 60208, USA; Chemistry of Life Processes Institute, Northwestern University, Evanston, IL 60208, USA.
Vinayak P DravidDepartment of Materials Science and Engineering, Northwestern University, Evanston, IL, USA; Chemistry of Life Processes Institute, Northwestern University, Evanston, IL 60208, USA.
Vadim BackmanDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA; Department of Chemistry, Northwestern University, Evanston, IL 60208, USA; Chemistry of Life Processes Institute, Northwestern University, Evanston, IL 60208, USA.

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008152 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ARDEHALI, HOSSEIN · 1987 to 2021
$24.0M
Risk-stratification of Prostate Cancers via Field Carcinogenesis NanocytologyR01CA200064 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, CRAWFORD, SUSAN E. · 2015 to 2019
$3.1M
Nanoscale/Molecular analysis of Fecal Colonocytes for Colorectal Cancer ScreeningR01CA165309 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, ROY, HEMANT K. · 2012 to 2016
$2.8M
High-throughput molecular-specific cell nanocytology for cancer screeningR01EB016983 · NIBIB · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, SUBRAMANIAN, HARIHARAN · 2013 to 2016
$1.3M
NCI NIH HHS R01 CA165309NCI NIH HHS R01 CA200064NIBIB NIH HHS R01 EB016983NIGMS NIH HHS T32 GM008152
6 · The paper itself

Abstract

Chemical fixation is nearly indispensable in the biological sciences, especially in circumstances where cryo-fixation is not applicable. While universally employed for the preservation of cell organization, chemical fixatives often introduce artifacts that can confound identification of true structures. Since biological research is increasingly probing ever-finer details of the cellular architecture, it is critical to understand the nanoscale transformation of the cellular organization due to fixation both systematically and quantitatively. In this work, we employed Partial Wave Spectroscopic (PWS) Microscopy, a nanoscale sensitive and label-free live cell spectroscopic-imaging technique, to analyze the effects of the fixation process through three commonly used fixation protocols for cells in vitro. In each method investigated, we detected dramatic difference in both nuclear and cytoplasmic nanoarchitecture between live and fixed states. But significantly, despite the alterations in cellular nanoscale organizations after chemical fixation, the population differences in chromatin structure (e.g. induced by a specific chemotherapeutic agent) remains. In conclusion, we demonstrated that the nanoscale cellular arrangement observed in fixed cells was fundamentally divorced from that in live cells, thus the quantitative analysis is only meaningful on the population level. This finding highlights the importance of live cell imaging techniques with nanoscale sensitivity or cryo-fixation in the interrogation of cellular structure, to complement more traditional chemical fixation methods.

Indexed as

NanostructuresAnimalsArtifactsCryopreservationFixativesHumansMagnetic Resonance ImagingMicroscopyTissue FixationFixativesChromatin nanostructureFixationPartial wave spectroscopy

Identifiers

PMID28673821
PMCPMC5726765

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.