Evidence map›Paper›PMID 28670847›Full record

Trial reportThe Prostate2017

Reclassification of prostate cancer risk using sequentially identified SNPs: Results from the REDUCE trial.

Haitao Chen, Rong Na, Vignesh T Packiam, Carly A Conran, Deke Jiang, Sha Tao, Hongjie Yu, Xiaoling Lin, Wei Meng, S Lilly Zheng and 3 more

Abstract readRandomized Controlled Trial
In one paragraph

Trial report in The Prostate, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Association Between Single Nucleotide Polymorphisms in the Vitamin D Receptor and Incidence of Dry Eye Disease in Chinese Han Population.Medical science monitor : international medical journal of experimental and clinical research · 2019
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Haitao ChenCenter for Genomic Translational Medicine and Prevention, School of Public Health, Fudan University, Shanghai, P. R. China.
Rong NaFudan Institute of Urology, Huashan Hospital, Fudan University, Shanghai, P. R. China.
Vignesh T PackiamSection of Urology, University of Chicago Medical Center, Chicago, Illinois.
Carly A ConranNorthShore University HealthSystem, Program for Personalized Cancer Care, Evanston, Illinois.
Deke JiangNorthShore University HealthSystem, Program for Personalized Cancer Care, Evanston, Illinois.
Sha TaoCenter for Genomic Translational Medicine and Prevention, School of Public Health, Fudan University, Shanghai, P. R. China.
Hongjie YuNorthShore University HealthSystem, Program for Personalized Cancer Care, Evanston, Illinois.
Xiaoling LinFudan Institute of Urology, Huashan Hospital, Fudan University, Shanghai, P. R. China.
Wei MengDepartment of Epidemiology, School of Public Health, Fudan University, Shanghai, P. R. China.
S Lilly ZhengNorthShore University HealthSystem, Program for Personalized Cancer Care, Evanston, Illinois.
Charles B BrendlerNorthShore University HealthSystem, Program for Personalized Cancer Care, Evanston, Illinois.
Brian T HelfandNorthShore University HealthSystem, Program for Personalized Cancer Care, Evanston, Illinois.
Jianfeng XuCenter for Genomic Translational Medicine and Prevention, School of Public Health, Fudan University, Shanghai, P. R. China.ORCID http://orcid.org/0000-0002-9419-6627
NorthShore University HealthSystem · USFudan University · CNUniversity of Chicago Medical Center · US

Funding

Clinical validity and utility of genomic targeted chemoprevention of PCaUC2CA148463 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI XU, JIANFENG · 2010 to 2010
$2.0M
Clinical validity and utility of genomic targeted chemoprevention of PCaRC2CA148463 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI XU, JIANFENG · 2009 to 2009
$2.0M
NCI NIH HHS RC2 CA148463NCI NIH HHS UC2 CA148463
6 · The paper itself

Abstract

backgroundAlthough the clinical validity of risk-associated single nucleotide polymorphisms (SNPs) for assessment of disease susceptibility has been consistently established, risk reclassification from increasing numbers of implicated risk-associated SNPs raises concern that it is premature for clinical use. Our objective is to assess the degree and impact of risk reclassification with the increasing number of SNPs.

methodsA total of 3239 patients from the Reduction by Dutasteride of Prostate Cancer Events (REDUCE) trial were included. Four genetic risk scores (GRSs) were calculated based on sets of sequentially discovered prostate cancer (PCa) risk-associated SNPs (17, 34, 51, and 68 SNPs).

resultsPair-wise correlation coefficients between sets of GRSs increased as more SNPs were included in the GRS: 0.80, 0.86, and 0.95 for 17 versus 34 SNPs, 34 versus 51 SNPs, and 51 versus 68 SNPs, respectively. Using a GRS of 1.5 as a cutoff for higher versus lower risk, reclassification rates of PCa risk decreased: 14.11%, 12.04%, and 8.15% for 17 versus 34 SNPs, 34 versus 51 SNPs, and 51 versus 68 SNPs, respectively. Evolving GRSs, nevertheless, provide a tool for further refining risk assessment. When all four sequential GRSs were considered, the detection rates of PCa for men whose GRSs were consistently <1.5, reclassified, and consistently ≥1.5 were 20.8%, 29.67%, and 39.26%, respectively (P

conclusionsRisk assessment using currently available SNPs is justified. Multiple GRS values from evolving sets of SNPs provide a valuable tool for better refining risk.

Indexed as

5-alpha Reductase InhibitorsAgedDutasterideHumansMaleMiddle AgedPolymorphism, Single NucleotideProspective StudiesProstatic NeoplasmsRisk Factors5-alpha Reductase InhibitorsDutasteridegeneticspolymorphismprostate cancerSNPs

Identifiers

PMID28670847
PMCPMC6949015
OpenAlexW2727579002

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.