Evidence map›Paper›PMID 28669817›Full record

ArticleDevelopmental biology2017

Deep ancestry of programmed genome rearrangement in lampreys.

Vladimir A Timoshevskiy, Ralph T Lampman, Jon E Hess, Laurie L Porter, Jeramiah J Smith

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
7.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Biparental inheritance of germline-specific chromosomes in the sea lamprey and their roles in oocytes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Programmed DNA Elimination in Vertebrates.Annual review of animal biosciences · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Expansions, diversification, and interindividual copy number variations of AID/APOBEC family cytidine deaminase genes in lampreys.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Vladimir A TimoshevskiyUniversity of Kentucky, Department of Biology, Lexington, KY 40506, USA.
Ralph T LampmanYakama Nation Fisheries Resource Management Program, Toppenish, WA 98948, USA.
Jon E HessColumbia River Inter-Tribal Fish Commission, Portland, OR 97232, USA.
Laurie L PorterColumbia River Inter-Tribal Fish Commission, Portland, OR 97232, USA.
Jeramiah J SmithUniversity of Kentucky, Department of Biology, Lexington, KY 40506, USA. Electronic address: jjsmit3@uky.edu.
Columbia River Inter-Tribal Fish Commission · USUniversity of Kentucky · USYakama Nation Tribal Council · US

Funding

Functional analysis of programmed genome rearrangementR01GM104123 · NIGMS · UNIVERSITY OF KENTUCKY · PI SMITH, JERAMIAH JAMES · 2013 to 2017
$1.4M
NIGMS NIH HHS R01 GM104123
6 · The paper itself

Abstract

In most multicellular organisms, the structure and content of the genome is rigorously maintained over the course of development. However some species have evolved genome biologies that permit, or require, developmentally regulated changes in the physical structure and content of the genome (programmed genome rearrangement: PGR). Relatively few vertebrates are known to undergo PGR, although all agnathans surveyed to date (several hagfish and one lamprey: Petromyzon marinus) show evidence of large scale PGR. To further resolve the ancestry of PGR within vertebrates, we developed probes that allow simultaneous tracking of nearly all sequences eliminated by PGR in P. marinus and a second lamprey species (Entosphenus tridentatus). These comparative analyses reveal conserved subcellular structures (lagging chromatin and micronuclei) associated with PGR and provide the first comparative embryological evidence in support of the idea that PGR represents an ancient and evolutionarily stable strategy for regulating inherent developmental/genetic conflicts between germline and soma.

Indexed as

GenomePhylogenyAnimalsDNAGene RearrangementGerm CellsLampreysDNAEmbryogenesisEvolutionGenomeLampreyProgrammed genome rearrangementVertebrate

Identifiers

PMID28669817
PMCPMC5554715
OpenAlexW2728749345

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.