Evidence map›Paper›PMID 28667827›Full record

ArticlePlant, cell & environment2017

The identification of new candidate genes Triticum aestivum FLOWERING LOCUS T3-B1 (TaFT3-B1) and TARGET OF EAT1 (TaTOE1-B1) controlling the short-day photoperiod response in bread wheat.

Meluleki Zikhali, Luzie U Wingen, Michelle Leverington-Waite, Sebastien Specel, Simon Griffiths

Open access · hybridAbstract read
In one paragraph

Article in Plant, cell & environment, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
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  7. Wheat bZIPC1 interacts with FT2 and contributes to the regulation of spikelet number per spike.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
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  15. A WheatInternational journal of molecular sciences · 2021
    Article
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  19. Major flowering time genes of barley: allelic diversity, effects, and comparison with wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Meluleki ZikhaliJohn Innes Centre, Norwich Research Park, NR4 7UH, Norwich, UK.ORCID http://orcid.org/0000-0001-5986-3079
Luzie U WingenJohn Innes Centre, Norwich Research Park, NR4 7UH, Norwich, UK.
Michelle Leverington-WaiteJohn Innes Centre, Norwich Research Park, NR4 7UH, Norwich, UK.
Sebastien SpecelLimagrain Europe Centre de Recherche de Chappes, Bâtiment 1, Route d'Ennezat, 63720, Chappes, France.
Simon GriffithsJohn Innes Centre, Norwich Research Park, NR4 7UH, Norwich, UK.
John Innes Centre · GBLimagrain (France) · FR

Funding

Biotechnology and Biological Sciences Research Council BB/H012176/1Biotechnology and Biological Sciences Research Council BBS/E/J/000C0617Biotechnology and Biological Sciences Research Council BBS/E/J/000CA393
6 · The paper itself

Abstract

Perception of photoperiod changes enables plants to flower under optimum conditions for survival. We used doubled haploid populations of crosses among Avalon × Cadenza, Charger × Badger and Spark × Rialto and identified short-day flowering time response quantitative trait loci (QTL) on wheat chromosomes 1BS and 1BL. We used synteny between Brachypodium distachyon and wheat to identify potential candidates for both QTL. The 1BL QTL peak coincided with TaFT3-B1, a homologue of the barley gene HvFT3, the most likely candidate gene. The 1BS QTL peak coincided with homologues of Arabidopsis thaliana SENSITIVITY TO RED LIGHT REDUCED 1, WUSCHEL-like and RAP2.7, which is also known as Zea mays TARGET OF EAT1, named TaSRR1-B1, TaWUSCHELL-B1 and TaTOE1-B1, respectively. Gene expression assays suggest that TaTOE1-B1 and TaFT3-B1 are expressed more during short days. We identified four alleles of TaFT3-B1 and three alleles of TaTOE1-B1. We studied the effect of these alleles in the Watkins and GEDIFLUX diversity panels by using 936 and 431 accessions, respectively. Loss of TaFT3-B1 by deletion was associated with late flowering. Increased TaFT3-B1 copy number was associated with early flowering, suggesting that TaFT3-B1 promotes flowering. Significant association was observed in the GEDIFLUX collection for TaTOE1-B1, a putative flowering repressor.

Indexed as

BreadGenes, PlantGenetic Association StudiesPhotoperiodAmino Acid SequenceChromosomes, PlantCrosses, GeneticFlowersGene Expression Regulation, PlantGenotypeMutationPlant ProteinsQuantitative Trait LociTriticumPlant ProteinsBrachypodium distachyonGEDIFLUXWatkinsZea mays

Identifiers

PMID28667827
PMCPMC5669021
OpenAlexW2731313911

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.